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NCI-CGR / IlluminaSequencingAnalysis

All Illumina Sequencing Related project from Xin will be recorded in this repo
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CustomizedQC: failed to rerun failed jobs (alignment) #19

Open lxwgcool opened 3 years ago

lxwgcool commented 3 years ago

Issue

Only create flowcell level working flag and never run the related sample

Reason

For the finished sample, the merged fastq file has been deleted. So the pipeline stopped at there.

Solution

Add the flag check for each sample, if the alignment has been finished, then continue to check next one rather than check the fastq file again.

lxwgcool commented 3 years ago

Also increase the simultaneously running flowcell from 3 to 4.