CustomizedQC: retrieve sample from S3 based on keytable

NCI-CGR / IlluminaSequencingAnalysis

All Illumina Sequencing Related project from Xin will be recorded in this repo

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CustomizedQC: retrieve sample from S3 based on keytable #38

Open lxwgcool opened 2 years ago

lxwgcool commented 2 years ago

Important dir

Retrieved BAM:
- /data/COVID_WGS/UpstreamAnalysis/PostPrimaryRun/Data/BAM/Batch
Keytable
- /data/COVID_WGS/UpstreamAnalysis/PostPrimaryRun/Keytable

lxwgcool commented 2 years ago

lxwgcool pushed a commit that referenced this issue 40 seconds ago New Function: Retrieve BAM from S3 & COVID_Auto_Framework … 0abf23e Details: 1: Retrieve BAM from S3 based on given keytable 2: COVID_Auto_Framework: used to make the 2nd pipeline be fully automatic for COVID project

ref #37 ref #39