Closed lightning-auriga closed 3 years ago
this isn't actually much of a problem. the extensions are not required for ldscores pipelines, as far as I can tell. the simplest thing will be to wrap the extensions definitions in some test for /usr/bin/env python3 or whatever. the only impact right now is a bunch of ugly error messages that actually don't do anything, so... I could also just leave it, if it's too much of a pain for some reason.
I have successfully suppressed these spurious notifications with a test for python3 presence in the environment. There's a variety of other weird warnings that pop up if the wrong environment is loaded; but these were if the correct environment was loaded, which is unacceptable.
which is bad, when ldsc/ldscores pipelines assume python2