NCI-CGR / plco-analysis

Primary workflow for the PLCO "Atlas" project
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modernize/update the checks #23

Open lightning-auriga opened 3 years ago

lightning-auriga commented 3 years ago

so the pipelines (and configuration directory itself) have testing subdirectories that contain simple test scripts for integration with TAP/automake. you can generally run them from top-level by running make config-check (or generally make {rulename}-check. they are not nearly, not even close, as expansive as they should be; furthermore the tests for primary analysis are terribly slow since they are not set up in such a way that allows parallelization.

please, Future Person, do a better job of this than the cobbled-together nonsense that's in there now!