handing ordinal target variable in the pipeline fails when the sample size of one of the comparisons is below the threshold

NCI-CGR / plco-analysis

Primary workflow for the PLCO "Atlas" project

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handing ordinal target variable in the pipeline fails when the sample size of one of the comparisons is below the threshold #30

Open shukwong opened 3 years ago

shukwong commented 3 years ago

when the sample size of one of the comparisons is below the threshold it does not produce the tracking files to inform the next steps, and then when running meta the pipeline breaks

make[1]: *** No rule to make target '.../?.SAIGE.categorical-combined.tsv.success', needed by '/.../?.SAIGE.final-ids.tsv.success'. Stop.