limitOutSJcollapsed default value is too low for some samples

[slsevilla]

Background: Yuanyuan encountered an error related to the --limitOutSJcollapsed in STAR

EXITING because of fatal error: buffer size for SJ output is too smallSolution: increase input parameter --limitOutSJcollapsed

looking at the manual, that flag is set by default:

--limitOutSJcollapsed
default: 1000000
int>0: max number of collapsed junctions

It's a known and documented issue: https://github.com/alexdobin/STAR/issues/719

Solution: 1) Update config file to include this as a flag 2) Update SNAKEMAKE, STAR RULE to include this flag 3) Publish new release with additional feature

[slsevilla]

added with commit b89dae8801134411b9d013515a11ec09094985ad