add peak calling for multimapped and mm/unique files

NCI-RBL / iCLIP

RNA Biology Pipeline to Characterize protein-RNA Interactions

https://rbl-nci.github.io/iCLIP/

MIT License

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Closed slsevilla closed 3 years ago

slsevilla commented 3 years ago

expand steps after create_bed to include: join(out_dir,'{mp}/11_dedup_split/{sp}.dedup.unique.mm.bam'),

slsevilla commented 3 years ago

also include, with this enhancement: join(out_dir,'{mp}/11_dedup_split/{sp}.dedup.bam'),

slsevilla commented 3 years ago

resolved with commit 7535fd159ab612e8d107f9b43ee11b0c04fcd942