NCI-RBL / iCLIP

RNA Biology Pipeline to Characterize protein-RNA Interactions
https://rbl-nci.github.io/iCLIP/
MIT License
4 stars 2 forks source link

Adding Dockerfile for custom iCLIP version #97

Closed skchronicles closed 2 years ago

skchronicles commented 2 years ago

Dockerfile for custom iCLIP version

About Cutadapt versions greater than or equal to 1.15 support multithreading, adding an option to run cutadapt in this mode.

Changes Changes This option is only enabled if the version of cutadapt in the user's PATH is greater than or equal to 1.15. Under the hood, I am checking for compatibility with the minimum version of cutadapt that is supported against the version of cutadapt in the user's path. If the version of cutadapt that is install does not support the -j option, then it is not provided at command line (i.e. meaning it will run the same as before).

Resources