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NCIP / CTAT-SPLICING

detection of cancer splicing aberrations
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include --ctat_genome_lib in the command in wiki? #4

Open mkmwong opened 3 years ago

mkmwong commented 3 years ago

Hi,

I was running the software according to the wiki but realized that the --ctat_genome_lib argument is missing from the example :) No issue with running the program, just thought that it should be included.

PS on a separate note - I was using GRCh37 plugnplay + intron annotation, and the html display for IGV says Gencode v28 basic?

brianjohnhaas commented 3 years ago

thanks for the info! Please leave this open and we'll address it for the next release.

Note, if you set the env var CTAT_GENOME_LIB to the directory path containing the genome lib, it'll use that directly and you won't need to set --ctat_genome_lib

thx again!