Closed basmac closed 4 years ago
Thanks for reporting @basmac. This appears to be an icclim
error:
File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/icclim/calc_percentiles.py", line 10, in
numpy.set_printoptions(threshold=numpy.nan)
I'll post the issue on that site there and link to this issue. Unless you are using icclim
, there should not be any issues.
icclim
issue: https://github.com/cerfacs-globc/icclim/issues/64
@basmac Has there been any recurring issues associated with this failure? I'd like to close the ticket if not. Thank you!
It seems that a weird threshold value was used? I am also closing the issue in icclim as I cannot reproduce without more information.
Under CentOS Linux linux256.psd.ad 2.6.32-696.30.1.el6.x86_64 #1 SMP Tue May 22 03:28:18 UTC 2018 x86_64 GNU/Linux using gnu compilers 8.3, running the test I get the following - any problems ? thanks
[root@linux256 ocgis]# export GDAL_DATA=$dir/anaconda3/share/gdal [root@linux256 ocgis]# python -c "from ocgis.test import run_simple; run_simple(verbose=False)" E..S...../usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/numpy/ma/core.py:3174: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use
arr[tuple(seq)]
instead ofarr[seq]
. In the future this will be interpreted as an array index,arr[np.array(seq)]
, which will result either in an error or a different result. dout = self.data[indx] /usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/numpy/ma/core.py:3206: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; usearr[tuple(seq)]
instead ofarr[seq]
. In the future this will be interpreted as an array index,arr[np.array(seq)]
, which will result either in an error or a different result. mout = _mask[indx] ........................./usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/ocgis/conv/nc.py:181: FutureWarning: Conversion of the second argument of issubdtype fromint
tonp.signedinteger
is deprecated. In future, it will be treated asnp.int64 == np.dtype(int).type
. if np.issubdtype(type(val), int): ..../usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/ocgis/conv/nc.py:183: FutureWarning: Conversion of the second argument of issubdtype fromfloat
tonp.floating
is deprecated. In future, it will be treated asnp.float64 == np.dtype(float).type
. elif np.issubdtype(type(val), float): ................................S................ERROR: Failure: ValueError (threshold must be numeric and non-NAN, try sys.maxsize for untruncated representation)
Traceback (most recent call last): File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/nose/loader.py", line 417, in loadTestsFromName addr.filename, addr.module) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/imp.py", line 235, in load_module return load_source(name, filename, file) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/imp.py", line 172, in load_source module = _load(spec) File "", line 684, in _load
File "", line 665, in _load_unlocked
File "", line 678, in exec_module
File "", line 219, in _call_with_frames_removed
File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/ocgis/test/test_ocgis/test_contrib/test_library_icclim.py", line 25, in
from ocgis.contrib.library_icclim import IcclimTG, IcclimSU, AbstractIcclimFunction, IcclimDTR, IcclimETR, \
File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/ocgis/contrib/library_icclim.py", line 11, in
from icclim.calc_percentiles import get_percentile_dict, get_percentile_arr
File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/icclim/calc_percentiles.py", line 10, in
numpy.set_printoptions(threshold=numpy.nan)
File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/numpy/core/arrayprint.py", line 246, in set_printoptions
floatmode, legacy)
File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/numpy/core/arrayprint.py", line 93, in _make_options_dict
raise ValueError("threshold must be numeric and non-NAN, try "
ValueError: threshold must be numeric and non-NAN, try sys.maxsize for untruncated representation
Ran 87 tests in 92.490s
FAILED (SKIP=2, errors=1)