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NCPP / ocgis

OpenClimateGIS is a set of geoprocessing and calculation tools for CF-compliant climate datasets.
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CentOS python3.6.8 test failure #499

Closed basmac closed 4 years ago

basmac commented 5 years ago

Under CentOS Linux linux256.psd.ad 2.6.32-696.30.1.el6.x86_64 #1 SMP Tue May 22 03:28:18 UTC 2018 x86_64 GNU/Linux using gnu compilers 8.3, running the test I get the following - any problems ? thanks

[root@linux256 ocgis]# export GDAL_DATA=$dir/anaconda3/share/gdal [root@linux256 ocgis]# python -c "from ocgis.test import run_simple; run_simple(verbose=False)" E..S...../usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/numpy/ma/core.py:3174: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use arr[tuple(seq)] instead of arr[seq]. In the future this will be interpreted as an array index, arr[np.array(seq)], which will result either in an error or a different result. dout = self.data[indx] /usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/numpy/ma/core.py:3206: FutureWarning: Using a non-tuple sequence for multidimensional indexing is deprecated; use arr[tuple(seq)] instead of arr[seq]. In the future this will be interpreted as an array index, arr[np.array(seq)], which will result either in an error or a different result. mout = _mask[indx] ........................./usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/ocgis/conv/nc.py:181: FutureWarning: Conversion of the second argument of issubdtype from int to np.signedinteger is deprecated. In future, it will be treated as np.int64 == np.dtype(int).type. if np.issubdtype(type(val), int): ..../usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/ocgis/conv/nc.py:183: FutureWarning: Conversion of the second argument of issubdtype from float to np.floating is deprecated. In future, it will be treated as np.float64 == np.dtype(float).type. elif np.issubdtype(type(val), float): ................................S................

ERROR: Failure: ValueError (threshold must be numeric and non-NAN, try sys.maxsize for untruncated representation)

Traceback (most recent call last): File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/nose/loader.py", line 417, in loadTestsFromName addr.filename, addr.module) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/imp.py", line 235, in load_module return load_source(name, filename, file) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/imp.py", line 172, in load_source module = _load(spec) File "", line 684, in _load File "", line 665, in _load_unlocked File "", line 678, in exec_module File "", line 219, in _call_with_frames_removed File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/ocgis/test/test_ocgis/test_contrib/test_library_icclim.py", line 25, in from ocgis.contrib.library_icclim import IcclimTG, IcclimSU, AbstractIcclimFunction, IcclimDTR, IcclimETR, \ File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/ocgis/contrib/library_icclim.py", line 11, in from icclim.calc_percentiles import get_percentile_dict, get_percentile_arr File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/icclim/calc_percentiles.py", line 10, in numpy.set_printoptions(threshold=numpy.nan) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/numpy/core/arrayprint.py", line 246, in set_printoptions floatmode, legacy) File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/numpy/core/arrayprint.py", line 93, in _make_options_dict raise ValueError("threshold must be numeric and non-NAN, try " ValueError: threshold must be numeric and non-NAN, try sys.maxsize for untruncated representation

Ran 87 tests in 92.490s

FAILED (SKIP=2, errors=1)

bekozi commented 5 years ago

Thanks for reporting @basmac. This appears to be an icclim error:

File "/usr/local/gfortran-8.3/anaconda3/lib/python3.6/site-packages/icclim/calc_percentiles.py", line 10, in 
numpy.set_printoptions(threshold=numpy.nan)

I'll post the issue on that site there and link to this issue. Unless you are using icclim, there should not be any issues.

icclim issue: https://github.com/cerfacs-globc/icclim/issues/64

bekozi commented 4 years ago

@basmac Has there been any recurring issues associated with this failure? I'd like to close the ticket if not. Thank you!

pagecp commented 3 years ago

It seems that a weird threshold value was used? I am also closing the issue in icclim as I cannot reproduce without more information.