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NDAR / nda-tools

Python package for interacting with NDA web services. Used to validate, submit, and download data to and from NDA.
MIT License
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vtcmd fails if log directory doesn't exist #12

Closed kdaily closed 4 years ago

kdaily commented 5 years ago

On first time installation, no directory at ${HOME}/NDAValidationResults/ exists to create a log file.

(nda-python3) [kdaily@tigger nda-tools]$ vtcmd -h
Traceback (most recent call last):
  File "/home/kdaily/.virtualenvs/nda-python3/bin/vtcmd", line 6, in <module>
    from NDATools.clientscripts.vtcmd import main
  File "/home/kdaily/.virtualenvs/nda-python3/lib/python3.7/site-packages/NDATools/clientscripts/vtcmd.py", line 2, in <module>
    from NDATools.Validation import Validation
  File "/home/kdaily/.virtualenvs/nda-python3/lib/python3.7/site-packages/NDATools/Validation.py", line 13, in <module>
    from NDATools.Utils import *
  File "/home/kdaily/.virtualenvs/nda-python3/lib/python3.7/site-packages/NDATools/Utils.py", line 16, in <module>
    logging.basicConfig(filename=log_file, level=logging.DEBUG, format="%(asctime)s:%(levelname)s:%(message)s")
  File "/usr/lib64/python3.7/logging/__init__.py", line 1900, in basicConfig
    h = FileHandler(filename, mode)
  File "/usr/lib64/python3.7/logging/__init__.py", line 1092, in __init__
    StreamHandler.__init__(self, self._open())
  File "/usr/lib64/python3.7/logging/__init__.py", line 1121, in _open
    return open(self.baseFilename, self.mode, encoding=self.encoding)
FileNotFoundError: [Errno 2] No such file or directory: '/home/kdaily/NDAValidationResults/debug_log_20190624T092809.txt'
PatrickJReed commented 5 years ago

I got the same error....however

sudo mkdir /home/ubuntu/NDAValidationResults sudo chmod 777 /home/ubuntu/NDAValidationResults/

gets past the error, it's dirty, but working.

obenshaindw commented 5 years ago

The latest update to NDATools addresses this issue. @PatrickJReed, @kdaily, or @cw-dvr8 if you pip uninstall and remove the NDAValidationResults directory, then re-install and attempt to run one of the command-line scripts it should automatically create the directory now and the FileNotFoundError should no longer occur.

PatrickJReed commented 5 years ago

following the reinstall...

vtcmd -h Traceback (most recent call last): File "/usr/local/bin/vtcmd", line 7, in from NDATools.clientscripts.vtcmd import main File "/usr/local/lib/python2.7/dist-packages/NDATools/clientscripts/vtcmd.py", line 3, in from NDATools.Utils import * File "/usr/local/lib/python2.7/dist-packages/NDATools/Utils.py", line 18, in config = ClientConfiguration(os.path.join(os.path.expanduser('~'), '.NDATools/settings.cfg')) File "/usr/local/lib/python2.7/dist-packages/NDATools/Configuration.py", line 23, in init self.validation_api = self.config.get("Endpoints", "validation") File "/usr/lib/python2.7/ConfigParser.py", line 607, in get raise NoSectionError(section) ConfigParser.NoSectionError: No section: 'Endpoints'

obenshaindw commented 5 years ago

@PatrickJReed I introduced a bug in trying to fix the other one. We just released an updated version that addresses the issue. Tested locally on python2.7 and python3.6 with fresh installation (including removing the ~/.NDATools directory).

Please let me know if you continue to see an error with the latest version.