Closed petralenzini closed 3 years ago
okay, so I guess its not a positional argument...using the -t flag before the S3_list works. Any chance you want to update the the instructions?
This works, too. Neither are issues, I suppose. Just a question of understanding the documentation.
downloadcmd s3://NDAR_Central_3/submission_32142/4088_01_MR/unprocessed/T1w_MPR/4088_01_MR_T1w_MPR.json s3://NDAR_Central_3/submission_32142/4088_01_MR/unprocessed/T1w_MPR/4088_01_MR_T1w_MPR.nii.gz -d HCPEPReleaseS3test -v -u plenzini -p
I'm trying to download just a subset of S3 links from the datastructure_manifest.txt of a particular package, per the downloadcmd -h instructions pasted here for reference in their entirety:
(abcd3.5.1) ubuntu@ip-172-31-47-9:~/spacedir$ downloadcmd -h Running NDATools Version 0.2.3 Opening log: /home/ubuntu/NDAValidationResults/debug_log_20210122T165559.txt usage: downloadcmd
This application allows you to enter a list of aws S3 paths and will download the files to your drive in your home folder. Alternatively, you may enter a packageID, an NDA data structure file or a text file with s3 links, and the client will download all files from the S3 links listed. Please note, the maximum transfer limit of data is 5TB at one time.
positional arguments: