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NDBL / HECIL

Hybrid Error Correction of Long Reads using Iterative Learning
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More than single short Reads and Long reads #1

Closed faraz89 closed 5 years ago

faraz89 commented 6 years ago

Hi, So i have 2 libraries of short reads and 4 files of long reads and i am meaning to use all. Is it possible i can use more than one file for both short reads and long reads arguments in the script? Something like this for example:

python HECIL.py -l LongRead1.fa -l LongRead2.fa -s ShortRead1.fq -s ShortRead2.fq -len 202 -o Out

Or do i need to merge the short reads libraries as well as long reads files before using this tool?

Faraz

ochoudhu commented 6 years ago

You would have to merge them since the current version of HECIL supports a single file for each read type.

semrich commented 6 years ago

Thanks Olivia

On Nov 13, 2017, at 8:28 PM, Olivia Choudhury notifications@github.com wrote:

You would have to merge them since the current version of HECIL supports a single file for each read type.

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