Open armish opened 5 years ago
Hi Armish, Thanks for your semi-automated message. This is an issue I will address so that the code is better suited for global use. The script itself was only run with small set of known sequences for which this method was sufficient.
Hi there,
This is a semi-automated message from a fellow bioinformatician. Through a GitHub search, I found that the following source files make use of BLAST's
-max_target_seqs
parameter:Based on the recently published report, Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows, there is a strong chance that this parameter is misused in your repository.
If the use of this parameter was intentional, please feel free to ignore and close this issue but I would highly recommend to add a comment to your source code to notify others about this use case. If this is a duplicate issue, please accept my apologies for the redundancy as this simple automation is not smart enough to identify such issues.
Thank you! -- Arman (armish/blast-patrol)