Fixing Phytoplankton Accumulation

[jcaracappa1]

Summary

All phytoplankton groups were accumulating in sediments causing an unrealistic benthic system. Instead of adding linear mortality, reduced sinking rates of PL and DF, and prevented sinking in PS. Followed by adjustments to return model to similar status.

Parameter changes

• neus_init.nc : PL svel to -1.55E-6 m/s, DF svel to -8.99E-7 m/s, PS svel to 0 m/s)
• at_biology.prm: LOB, SCA, HER, SUF, MPF, BSB, SDF, and WSK growth changes

R Files

• make_atlantis_diagnostic_tables.R : Updated with package updates

[jcaracappa1]

@andybeet @gambler1650

[jcaracappa1]

Merge 02232022Model_Comparison_Biomass.pdf PL_DF_SlowSink_4_diagnostics.csv

[RGamble1]

@andybeet looks good to me.