v2.0.2 - Baseline calibration v6536

[jcaracappa1]

Summary

Contains baseline calibration of NEUSv2 such that it meets persistence and reasonability criteria as well as adequate sensitivity to fishing pressure. Include pull requests #115 to #223

Specific changes include:

• New initial size-at-age & numbers & numbers-at-age
• flagtempsensitive turned on with q10=2
• full review of diet parameters and comparisons to stomach contents database
• Fixed incorrect catch forcing by incorporating NAFO data and new comlandr updates
• Updated physics to 2021 with GLORYS12V1 updates
• All species either use Beverton-Holt or pupping recruitment (no constant catch)
• General calibration of species mum, C, mL, mQ, BHalpha, BHbeta, and/or pPREY

Code changes

• Improved the organization of R, data, and data-raw directories
• Improved the performance of post-processing routines
• Creation of batch processing routines
• Scripts for creating and analyzing fishing sensitivity scenarios

[jcaracappa1]

@RGamble1 @andybeet Version numbering is based on all changes being backwards compatible

[andybeet]

looks good to me too