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integrating read_in_cod_assessment_data.R #4

Open mle2718 opened 3 months ago

mle2718 commented 3 months ago

@kimberly-bastille

  1. Directories need to be set to read in from google drive:

https://github.com/NEFSC/READ.SSB.groundfishRecDST/blob/07ccf048c72147f8b28e00937fbb5f06a96bae16/R/read_in_cod_assessment_data.R#L63

https://github.com/NEFSC/READ.SSB.groundfishRecDST/blob/07ccf048c72147f8b28e00937fbb5f06a96bae16/R/read_in_cod_assessment_data.R#L70

https://github.com/NEFSC/READ.SSB.groundfishRecDST/blob/07ccf048c72147f8b28e00937fbb5f06a96bae16/R/read_in_cod_assessment_data.R#L141-L142

https://github.com/NEFSC/READ.SSB.groundfishRecDST/blob/07ccf048c72147f8b28e00937fbb5f06a96bae16/R/read_in_cod_assessment_data.R#L242

https://github.com/NEFSC/READ.SSB.groundfishRecDST/blob/07ccf048c72147f8b28e00937fbb5f06a96bae16/R/read_in_cod_assessment_data.R#L276

https://github.com/NEFSC/READ.SSB.groundfishRecDST/blob/07ccf048c72147f8b28e00937fbb5f06a96bae16/R/read_in_cod_assessment_data.R#L308

  1. Need to make sure the proper version of WHAM is installed. Nothing to do for this particular item, except to make sure that you install that particular commit before trying to run.

https://github.com/NEFSC/READ.SSB.groundfishRecDST/blob/07ccf048c72147f8b28e00937fbb5f06a96bae16/R/read_in_cod_assessment_data.R#L141-L145

https://github.com/NEFSC/READ.SSB.groundfishRecDST/blob/705952d9e15390e3797db386609f4a38587b9935/R/read_in_cod_assessment_data.R#L55