search

NERSC / buildtest-nersc

MIT License
8 stars 16 forks source link

warpx not working in e4s/22.05 via spack test run #159

Closed shahzebsiddiqui closed 10 months ago

shahzebsiddiqui commented 1 year ago

We are unable to run test for warpx via spack it fails to find library libablastr.so so i am not sure. @ax3l can we have a standalone test we can run outside of spack test. 

 ~/ spack test run warpx
==> Spack test fdhupkeqc7bk47kz2c47i45enk646qk6
==> Testing package warpx-22.05-bc7lvor
==> Error: TestFailure: 1 tests failed.

Command exited with status 127:
    '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-bc7lvorndjwiogfogbd24ttkp4de32sa/bin/warpx.2d.MPI.OMP.DP.OPMD.PSATD.QED' '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-bc7lvorndjwiogfogbd24ttkp4de32sa/.spack/test/Examples/Physics_applications/laser_acceleration/inputs_2d' 'max_step=50' 'diag1.intervals=10' 'diag1.format=openpmd'
/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-bc7lvorndjwiogfogbd24ttkp4de32sa/bin/warpx.2d.MPI.OMP.DP.OPMD.PSATD.QED: error while loading shared libraries: libablastr.so: cannot open shared object file: No such file or directory

1 error found in test log:
     2    ==> [2023-01-12-13:34:51.747683] Installing /global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-bc7lvorndjwiogfogbd24ttkp4de32sa/.spack/test to /global/homes/s/siddiq90/.spack/test/fdhupkeqc7bk47
          kz2c47i45enk646qk6/warpx-22.05-bc7lvor/cache/warpx
     3    ==> [2023-01-12-13:34:51.783646] Smoke test for WarpX
     4    ==> [2023-01-12-13:34:51.784204] '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-bc7lvorndjwiogfogbd24ttkp4de32sa/bin/warpx.2d.MPI.OMP.DP.OPMD.PSATD.QED' '/global/common/software/spackecp/pe
          rlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-bc7lvorndjwiogfogbd24ttkp4de32sa/.spack/test/Examples/Physics_applications/laser_acceleration/inputs_2d' 'max_step=50' 'diag1.intervals=10' 'diag1.format=openpmd'
     5    /global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-bc7lvorndjwiogfogbd24ttkp4de32sa/bin/warpx.2d.MPI.OMP.DP.OPMD.PSATD.QED: error while loading shared libraries: libablastr.so: cannot open share
          d object file: No such file or directory
     6    FAILED: Command exited with status 127:
     7        '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-bc7lvorndjwiogfogbd24ttkp4de32sa/bin/warpx.2d.MPI.OMP.DP.OPMD.PSATD.QED' '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spac
          k/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-bc7lvorndjwiogfogbd24ttkp4de32sa/.spack/test/Examples/Physics_applications/laser_acceleration/inputs_2d' 'max_step=50' 'diag1.intervals=10' 'diag1.format=openpmd'
  >> 8    /global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-bc7lvorndjwiogfogbd24ttkp4de32sa/bin/warpx.2d.MPI.OMP.DP.OPMD.PSATD.QED: error while loading shared libraries: libablastr.so: cannot open share
          d object file: No such file or directory
     9
     10     File "/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/bin/spack", line 98, in <module>
     11       sys.exit(spack.main.main())
     12     File "/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/lib/spack/spack/main.py", line 910, in main
     13       return _main(argv)
     14     File "/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/lib/spack/spack/main.py", line 865, in _main

/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/lib/spack/spack/build_environment.py:1076, in _setup_pkg_and_run:
       1073        tb_string = traceback.format_exc()
       1074
       1075        # build up some context from the offending package so we can
  >>   1076        # show that, too.
       1077        package_context = get_package_context(tb)
       1078
       1079        logfile = None

See test log for details:
  /global/homes/s/siddiq90/.spack/test/fdhupkeqc7bk47kz2c47i45enk646qk6/warpx-22.05-bc7lvor-test-out.txt

==> Testing package warpx-22.05-yis3uh6
==> Error: TestFailure: 1 tests failed.

Command exited with status 127:
    '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-yis3uh6q3g5mrknsy6jfsj4bjarjmvxn/bin/warpx.3d.MPI.OMP.DP.OPMD.PSATD.QED' '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-yis3uh6q3g5mrknsy6jfsj4bjarjmvxn/.spack/test/Examples/Physics_applications/laser_acceleration/inputs_3d' 'max_step=50' 'diag1.intervals=10' 'diag1.format=openpmd'
/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-yis3uh6q3g5mrknsy6jfsj4bjarjmvxn/bin/warpx.3d.MPI.OMP.DP.OPMD.PSATD.QED: error while loading shared libraries: libablastr.so: cannot open shared object file: No such file or directory

1 error found in test log:
  >> 6    FAILED: Command exited with status 127:

/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/lib/spack/spack/build_environment.py:1076, in _setup_pkg_and_run:
       1073        tb_string = traceback.format_exc()
       1074
       1075        # build up some context from the offending package so we can
  >>   1076        # show that, too.
       1077        package_context = get_package_context(tb)
       1078
       1079        logfile = None

See test log for details:
  /global/homes/s/siddiq90/.spack/test/fdhupkeqc7bk47kz2c47i45enk646qk6/warpx-22.05-yis3uh6-test-out.txt

==> Testing package warpx-22.05-s5cky2k
==> Error: TestFailure: 1 tests failed.

Command exited with status 127:
    '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-s5cky2knhzpuuwshoodqwkarpe2elx5a/bin/warpx.RZ.MPI.OMP.DP.OPMD.PSATD.QED' '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-s5cky2knhzpuuwshoodqwkarpe2elx5a/.spack/test/Examples/Physics_applications/laser_acceleration/inputs_rz' 'max_step=50' 'diag1.intervals=10' 'diag1.format=openpmd' 'diag1.fields_to_plot=Er Et Ez Br Bt Bz jr jt jz rho'
/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-s5cky2knhzpuuwshoodqwkarpe2elx5a/bin/warpx.RZ.MPI.OMP.DP.OPMD.PSATD.QED: error while loading shared libraries: libablastr.so: cannot open shared object file: No such file or directory

1 error found in test log:
     2    ==> [2023-01-12-13:35:21.557162] Installing /global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-s5cky2knhzpuuwshoodqwkarpe2elx5a/.spack/test to /global/homes/s/siddiq90/.spack/test/fdhupkeqc7bk47
          kz2c47i45enk646qk6/warpx-22.05-s5cky2k/cache/warpx
     3    ==> [2023-01-12-13:35:21.636260] Smoke test for WarpX
     4    ==> [2023-01-12-13:35:21.636818] '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-s5cky2knhzpuuwshoodqwkarpe2elx5a/bin/warpx.RZ.MPI.OMP.DP.OPMD.PSATD.QED' '/global/common/software/spackecp/pe
          rlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-s5cky2knhzpuuwshoodqwkarpe2elx5a/.spack/test/Examples/Physics_applications/laser_acceleration/inputs_rz' 'max_step=50' 'diag1.intervals=10' 'diag1.format=openpmd' 'diag1.fields_t
          o_plot=Er Et Ez Br Bt Bz jr jt jz rho'
     5    /global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-s5cky2knhzpuuwshoodqwkarpe2elx5a/bin/warpx.RZ.MPI.OMP.DP.OPMD.PSATD.QED: error while loading shared libraries: libablastr.so: cannot open share
          d object file: No such file or directory
     6    FAILED: Command exited with status 127:
     7        '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-s5cky2knhzpuuwshoodqwkarpe2elx5a/bin/warpx.RZ.MPI.OMP.DP.OPMD.PSATD.QED' '/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spac
          k/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-s5cky2knhzpuuwshoodqwkarpe2elx5a/.spack/test/Examples/Physics_applications/laser_acceleration/inputs_rz' 'max_step=50' 'diag1.intervals=10' 'diag1.format=openpmd' 'diag1.fields_to_plot=Er Et Ez Br Bt Bz jr j
          t jz rho'
  >> 8    /global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/opt/spack/cray-sles15-zen3/gcc-11.2.0/warpx-22.05-s5cky2knhzpuuwshoodqwkarpe2elx5a/bin/warpx.RZ.MPI.OMP.DP.OPMD.PSATD.QED: error while loading shared libraries: libablastr.so: cannot open share
          d object file: No such file or directory
     9
     10     File "/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/bin/spack", line 98, in <module>
     11       sys.exit(spack.main.main())
     12     File "/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/lib/spack/spack/main.py", line 910, in main
     13       return _main(argv)
     14     File "/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/lib/spack/spack/main.py", line 865, in _main

/global/common/software/spackecp/perlmutter/e4s-22.05/78535/spack/lib/spack/spack/build_environment.py:1076, in _setup_pkg_and_run:
       1073        tb_string = traceback.format_exc()
       1074
       1075        # build up some context from the offending package so we can
  >>   1076        # show that, too.
       1077        package_context = get_package_context(tb)
       1078
       1079        logfile = None

See test log for details:
  /global/homes/s/siddiq90/.spack/test/fdhupkeqc7bk47kz2c47i45enk646qk6/warpx-22.05-s5cky2k-test-out.txt

======================== 3 failed, 0 passed of 3 specs =========================
==> Error: 3 test(s) in the suite failed.
shahzebsiddiqui commented 10 months ago

closing this task since e4s/22.05 is removed