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NESCent / MINOTAUR

Multivariate vIsualisatioN and OuTlier Analysis Using R
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error with rCharts in latest version of R and MANIPULATE legacy #2

Closed DrK-Lo closed 9 years ago

DrK-Lo commented 9 years ago

Hi Team, I tried downloading our package from github but ran into some hurdles...

install.packages("devtools") library(devtools) install_github("NESCent/MINOTAUR") library(MINOTAUR)

ERROR: dependencies ‘rCharts’, ‘rHighcharts’ are not available for package ‘MANIPULATE’

darencard commented 9 years ago

Just tried it with R v. 3.1.3 (Smooth Sidewalk) and wasn't able to install MINOTAUR using devtools. Cloning and opening the package in R Studio worked fine for me though. Upgrading to R v. 3.2.0 right now (installing very slowly), as that might be the cause of the error you're getting.

grunwald commented 9 years ago

All runs fine for me downloading MINOTAUR fro github manually (e.g., not via devtools::...). I can run the shiny App. My question is what useful analysis can I currently do in the shiny app?

The command line function like KernelDensity() run great!

Thanks, Nik

On May 9, 2015, at 7:44 AM, Daren Card notifications@github.com wrote:

Just tried it with R v. 3.1.3 (Smooth Sidewalk) and wasn't able to install MINOTAUR using devtools. Cloning and opening the package in R Studio worked fine for me though. Upgrading to R v. 3.2.0 right now (installing very slowly), as that might be the cause of the error you're getting.

— Reply to this email directly or view it on GitHub https://github.com/NESCent/MINOTAUR/issues/2#issuecomment-100498452.

Niklaus J. Grünwald Research Plant Pathologist | Horticultural Crops Research Laboratory | USDA ARS Professor (courtesy) | Department of Botany and Plant Pathology | Oregon State University 3420 NW Orchard Ave. | Corvallis, OR 97330 | USA | Tel 541.738-4049 | Fax 541.738-4025 grunwaldlab.cgrb.oregonstate.edu http://grunwaldlab.cgrb.oregonstate.edu/ | phytophthora-id.org http://phytophthora-id.org/ | oregonstate.edu/instruct/dce/phytophthora http://oregonstate.edu/instruct/dce/phytophthora | phytophthora-smallrna-db.cgrb.oregonstate.edu http://phytophthora-smallrna-db.cgrb.oregonstate.edu/

darencard commented 9 years ago

Shiny app worked fine for me with R v.3.2.0. Still not able to install via devtools, but I'm not too concerned about that right now.

Strangely, all of the packages I've previously installed are now missing upon the upgrade, including ones required by our app. I tried manually requiring some (e.g., adegenet), and got the anticipated error message saying that it isn't installed. However, the app still runs without issue. Not sure what's going on there. I was able to install rCharts and rHighCharts via devtools in this new version, so not sure where Katie's error is coming from.

darencard commented 9 years ago

... and currently I'm not sure there is much of anything useful you can do with the Shiny app. Some of the guts are there, such that if you can load a dataset you can subset and filter and probably make some plots, but not confident it would be that easy "out of the box".

grunwald commented 9 years ago

Thanks