NESCent / hip_hack_howto

Hackathon guidance from NESCent's Hackathons, Interoperability, Phylogenies working group.
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Integrate with hackathon literature #28

Closed arlin closed 8 years ago

arlin commented 8 years ago

One of our target audiences is the small group of people who care about the process and effectiveness of participant-driven meetings. So far as I know, there is a small literature on this. We could find it working back from Trainer, et al. I think we need to be familiar with this, use some of the terminology, and cite other studies. In particular, Trainer, et al, are saying some of the same things we want to say— citing other research makes us more credible and saves space.

The task here is (1) identify the papers to read and cite (2) read them, learn the language, and identify shared concerns, (3) integrate that knowledge into the Intro, Results and Discussion of the manuscript.

rvosa commented 8 years ago

Should we perhaps adopt some sensible reference management scheme, e.g. make a mendeley library, or maintain a bibtex library in a repo?

arlin commented 8 years ago

I have an EndNote library. The citation markers are in double square brackets at the end.

I can convert this to Mendeley or bibtex. We should decide this based on the word processor, presumably.

msrosenberg commented 8 years ago

Has anyone used Authorea? It's theoretically designed to mix the advantages of Google Docs and Github and also include real citation support, but I've never used it.

hlapp commented 8 years ago

Has anyone used Authorea? It's theoretically designed to mix the advantages of Google Docs and Github and also include real citation support, but I've never used it.

I have. It's got some nice features, but at least at the time the commenting was quite awkward because it was based on whole sections or paragraphs. I think it does use Bibtex though for reference management.

There are also Overleaf (f.k.a. WriteLaTeX) and ShareLaTeX. The latter integrates nicer with Github than the former, and the former interfaces directly with PeerJ submission. I have co-authored papers on both and they work well. And then there's Lens Writer, which is based on Substance.io, and developed in collaboration with eLife.

arlin commented 8 years ago

Collected a bunch of additional sources.
Listed all the sources I have in a spreadsheet shared with Enrico and Rutger Moved all of Aidan's comments into the spreadsheet I still need to get some references from Trainer, et al.

arlin commented 8 years ago

Assessed 15 sources and created notes on the spreadsheet. This took about 4 hours.

arlin commented 8 years ago

Rutger and I had a chat to start consolidating our knowledge. We are more than half done with this issue. We drafted a bullet list of points that reference the prior literature, e.g., papers that refer to the importance of networking. Here is the plan

  1. finish assessing about 15 more papers (Arlin, Rutger)
  2. add all papers to EndNote (Arlin)
  3. expand bullet points into well-crafted sentences (Arlin, Rutger)
  4. add citations to the bullet points (Arlin)
  5. make a copy of the bullet points for reference (open)
  6. distribute the bullet points as needed in the intro, results and conclusion (open)
arlin commented 8 years ago

got about 15 more papers into EndNote. This takes time when they are not indexed in pubmed. 8 more to do.

arlin commented 8 years ago

Finished #2, getting everything into EndNote. Finished evaluating about 6 more brief papers. I only have 4 left.

arlin commented 8 years ago

writing a summary with bullet points to help condense the material

arlin commented 8 years ago

We finished reading the papers. Now @rvosa and @arlin we are working on integrating these into the manuscript.

rvosa commented 8 years ago

I went through it and inserted citations to the relevant papers I've read. There are now no { ref } placeholders left in the manuscript.

arlin commented 8 years ago

Great! I wasn't satisfied with my previous summary of the literature, so I made a new one here:

https://github.com/NESCent/hip_hack_howto/blob/master/research/lit_summary2.md

Now I'm going through and adding some of that content.

arlin commented 8 years ago

all the citations have been added. we need to smooth out some of the content. I'm going to close this.