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NESCent / popgenInfo

Vignettes for Population Genetics in R
http://popgen.nescent.org
MIT License
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The SummarySequenceData vignette fails to build #89

Open hlapp opened 8 years ago

hlapp commented 8 years ago

This is due to changes in CRAN packages and needs fixing. The vignette therefore had to be removed from the master branch, and is now reinstated on the summaryseqstats branch. Development to fix the issues can resume on that branch.

zkamvar commented 8 years ago

Bump.

Some things that are causing this to fail:

  1. The data have changed so there are now 40 samples present as opposed to 20.
  2. HWE.test.genind is no longer valid, having been replaced by hw.test from pegas, which does not support haploid data. It might be beneficial to remove this.
mmlopezu commented 8 years ago

I'll work on it ASAP

On Tue, Feb 2, 2016 at 12:40 AM, Zhian N. Kamvar notifications@github.com wrote:

Bump.

Some things that are causing this to fail:

  1. The data have changed so there are now 40 samples present as opposed to 20.
  2. HWE.test.genind is no longer valid, having been replaced by hw.test from pegas, which does not support haploid data. It might be beneficial to remove this.

— Reply to this email directly or view it on GitHub https://github.com/NESCent/popgenInfo/issues/89#issuecomment-178385712.

Margarita M. López-Uribe NSF Postdoctoral Fellow Department of Entomology and Department of Applied Ecology North Carolina State University https://sites.google.com/a/cornell.edu/mm-lopez-uribe/ https://sites.google.com/a/cornell.edu/margarita-m-lopez-uribe/