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NESCent / r-popgen-hackathon

Population Genetics Hackathon, to be held at NESCent on March 16-20, 2015
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Data management #3

Open smanel opened 9 years ago

smanel commented 9 years ago

We have to think to which genetic data we can use to test methods: it can be our own dataset, or data available on the web.

zkamvar commented 9 years ago

That's a good point. It would be beneficial to think about the different types of genetic data we can use. Things like RAD and GBS are popular, but there are other methods such as targeted sequence capture.

MichelleDBG commented 9 years ago

Coming from a small institution, we're not equipped to do next-gen sequencing, so to represent the broad small scale work that will turn to R for analyses, I'd like to see traditional dataset of microsats and sequences. I can provide some of our datasets as examples.

thibautjombart commented 9 years ago

Small DNA sequences or microsat datasets are already available in several packages, but new ones are most welcome. The only limitation is that they can be shared publicly on the web (not just by the participants, by everyone). It would be very useful to list them on the wiki of the event.

On Wed, Feb 25, 2015 at 7:22 PM, Michelle DePrenger-Levin < notifications@github.com> wrote:

Coming from a small institution, we're not equipped to do next-gen sequencing, so to represent the broad small scale work that will turn to R for analyses, I'd like to see traditional dataset of microsats and sequences. I can provide some of our datasets as examples.

— Reply to this email directly or view it on GitHub https://github.com/NESCent/r-popgen-hackathon/issues/3#issuecomment-76035448 .

thibautjombart commented 9 years ago

I created the page on the wiki: https://github.com/NESCent/r-popgen-hackathon/wiki/Datasets Please feel free to add yours! =D