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NEUBIAS / bise

BIII development repository
http://biii.eu
GNU General Public License v2.0
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Reimport ALPHA 6 release of EDAM BioImaging in BIII database #127

Open PerrineGilloteaux opened 4 years ago

matuskalas commented 4 years ago

Or maybe we should release a new alpha06 at the end of taggathon? Depending on how much new stuff we have, and time left to do the checking & release...

czhci commented 4 years ago

related: #72

matuskalas commented 4 years ago

alpha06 will be ready to be imported SOON.

REMOVED CONCEPTS IN EDAM-bioimaging_alpha06 WRT alpha04:

Class: http://edamontology.org/operation_Neuron_image_analysis Label: Neuron image analysis REMOVED AS OPERATION AND ADDED AS TOPIC INSTEAD (ID http://edamontology.org/topic_Neuron_image_analysis) SAME LABEL

Class: http://edamontology.org/topic___F%C3%B6rster_resonance_energy_transfer Label: Förster resonance energy transfer REPLACED WITH NEW ID http://edamontology.org/topic___Foerster_resonance_energy_transfer (oe INSTEAD OF ö) SAME LABEL

Class: http://edamontology.org/format_roi Label: Region of interest REPLACED WITH NEW ID http://edamontology.org/format_Roi (CAPITAL R) SAME LABEL

Class: http://edamontology.org/operation_Interactive_segmentation Label: Interactive segmentation REPLACED WITH 2 NEW CONCEPTS TO CONSIDER:

1.
ID: http://edamontology.org/operation______Manual_segmentation
LABEL: Manual segmentation

2.
ID: http://edamontology.org/operation______Semi-automatic_segmentation
LABEL: Semi-automatic segmentation

Class: http://edamontology.org/operation_Local_thresholding Label: Local thresholding REPLACED WITH ID: http://edamontology.org/operation_Adaptative_thresholding LABEL: Adaptive Thresholding

PerrineGilloteaux commented 1 year ago

To do some batch tagging and to check if Alpha06 ready to import. To be scheduled