NEUBIAS / training-resources

Resources for teaching/preparing to teach bioimage analysis
https://neubias.github.io/training-resources
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Improve OME-Zarr S3 module #270

Open tischi opened 2 years ago

tischi commented 2 years ago

@joshmoore

I am working on a teaching module about accessing OME-Zarr on S3. If you scroll down to the activities, you see that currently there only is the MoBIE way of doing things.

Could you (or feel free to ping one of your colleagues) please add the corresponding activities for:

Ideal would be a contribution in the form of one or several PR, where you simply add markdown documents here.


And if you have an idea for an improvement of the figure, let me know 😄 I think having an object store in the middle and then all the different applications accessing it could be nice. Do you have such a figure by chance?

joshmoore commented 2 years ago

cc: @will-moore @jburel @pwalczysko

jburel commented 2 years ago

For reference: Initial info about MoBIE/zarr was added https://github.com/ome/omero-guide-fiji/blob/master/docs/view_mobie_zarr.rst

will-moore commented 2 years ago

My notebook from I2K 2020 might be useful here: https://github.com/will-moore/i2k-2020-zarr-workshop/blob/main/ome-zarr-intro.ipynb