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NEUBIAS / training-resources

Resources for teaching/preparing to teach bioimage analysis
https://neubias.github.io/training-resources
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Batch processing #713

Closed jhennies closed 3 months ago

jhennies commented 3 months ago
jhennies commented 3 months ago

ping @tischi I've nicened up the comments.

Shall we add that you can open the result in MoBIE here, for example as final bullet point in the list? Currently MoBIE is not mentioned at all...

jhennies commented 3 months ago

What's up with the failed tests, they have nothing to do with the batch processing module, right? Or did I break anything in this branch?

tischi commented 3 months ago

Or did I break anything in this branch?

Not your fault, some python scripts don't run through. We can ignore this now and fix them later...

While it looks nice we should remove this code block because this is python specific. The activity preface must be general. You could add some pseudo code instead.

image

Shall we add that you can open the result in MoBIE

Again, we should not put anything specific in the activity preface, leaving teachers the option to show whatever implemenation they like best. We could add a sentence like: "Inspect the analysis results in a suitable software".

In fact, probably the exact same table could be opened with the Image Data Explorer.

We could add a link to MoBIE and the Image Data Explorer into the module.md:

learn_next:

external_links:
  - "[Batch processing in ImageJ](https://imagej.net/scripting/batch)"
  - MoBIE...
  - ImageDataExplorer ...
jhennies commented 3 months ago

Better? I also added mobie and imageDataExplorer to the external links. Hope I got the correct links

tischi commented 3 months ago

Great! Let's merge it now! We can fine tune then directly on master.