Add content from communities: nfdi4bioimage, gerbi, euro-bioimaging, neubias, bio-formats

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Added contents:

nfdi4bioimage

https://zenodo.org/communities/nfdi4bioimage

gerbi

https://zenodo.org/communities/gerbi

• Abdominal Imaging Window (AIW) for Intravital Imaging
• Round Table Workshop 2 - Correction of Drift and Movement
• Round Table Workshop 1 - Sample Stabilization in intravital Imaging
• Conference Slides - 4th Day of Intravital Microscopy
• Implantation of abdominal imaging windows on the mouse liver
• Implantation of abdominal imaging windows on the mouse liver - short version
• Implantation of abdominal imaging windows on the mouse kidney - short version
• Implantation of abdominal imaging windows on the mouse kidney
• GerBI-Chat: Teil 2 - Wie schreibe ich am besten einen Großegräteantrag
• GerBI-Chat: Teil 1 - Vom Bedarf bis zum Großgeräteantrag-Schreiben
• Key-Value pair template for annotation of datasets in OMERO for light- and electron microscopy data within the research group of Prof. Müller-Reichert
• Key-Value pair template for annotation in OMERO for light microscopy data acquired with AxioScan7 - Core Facility Cellular Imaging (CFCI)
• Zeiss AxioZoom Stage Adapter - 12/6Well Plate
• Zeiss AxioZoom Stage Adapter
• Zeiss AxioZoom Stage Adapter - EM block holder
• Zeiss AxioZoom Stage Adapter - Microscope slides
• Intravital microscopy contrasting agents for application - Database
• Development of a platform for advanced optics education, training and prototyping
• [Community Meeting 2024] Supporting and financing RDM projects within GerBI
• Slides about FLUTE: a Python GUI for interactive phasor analysis of FLIM data
• The Information Infrastructure for BioImage Data (I3D:bio) project to advance FAIR microscopy data management for the community
• [Community Meeting 2024] Overview Team Image Data Analysis and Management

  euro-bioimaging

  https://zenodo.org/communities/euro-bioimaging

• Image Repository Decision Tree - Where do I deposit my imaging data
• Euro-BioImaging/BatchConvert: v0.0.4
• Preprint: "Be Sustainable", Recommendations for FAIR Resources in Life Sciences research: EOSC-Life's Lessons
• Euro-BioImaging Scientific Ambassadors Program
• Euro-BioImaging ERIC Annual Report 2022
• Building a FAIR image data ecosystem for microscopy communities

  neubias

  https://zenodo.org/communities/neubias

• Gut Analysis Toolbox
• Gut Analysis Toolbox: Training data and 2D models for segmenting enteric neurons, neuronal subtypes and ganglia
• Research Data Managemet and how not to get overwhelmed with data
• Preprint: "Be Sustainable", Recommendations for FAIR Resources in Life Sciences research: EOSC-Life's Lessons
• Artificial Blobs and Labels image
• ImageJ tool for percentage estimation of pneumonia in lungs
• Multiplexed histology of COVID-19 post-mortem lung samples - CONTROL CASE 1 FOV1
• Measuring reporter activity domain in EPI aggregates and Gastruloids.ijm
• Interactive Image Data Flow Graphs
• Optimisation and Validation of a Swarm Intelligence based Segmentation Algorithm for low Contrast Positron Emission Tomography
• CZI (Carl Zeiss Image) dataset with artificial test camera images with various dimension for testing libraries reading
• SciAugment
• martinschatz-cz/SciCount: v1.0.0 with reusable example notebooks
• Morphological analysis of neural cells with WEKA and SNT Fiji plugins
• Large tiling confocal acquisition (rat brain)
• 3D Nuclei annotations and StarDist 3D model(s) (rat brain)
• Multi-Template-Matching for object-detection (slides)
• Introduction to light-microscopy / Widefield microscopy
• Liver Micrometastases area quantification using QuPath and pixel classifier
• Cellpose models for Label Prediction from Brightfield and Digital Phase Contrast images
• HeLa "Kyoto" cells under the scope
• Digital Phase Contrast on Primary Dermal Human Fibroblasts cells
• Cellpose model for Digital Phase Contrast images
• LauLauThom/MaskFromRois-Fiji: Masks from ROIs plugins for Fiji - initial release
• Deconvolution Test Dataset

  bio-formats

  https://zenodo.org/communities/bio-formats

• Ink in a dish
• Evident OIR sample files with lambda scan - FV 4000
• Axioscan 7 fluorescent channels not displaying in QuPath
• ICS/IDS stitched file
• Human DAB staining Axioscan BF 20x