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NFDI4Chem / nmrxiv

nmrXiv is currently developed as the FAIR, consensus-driven NMR data repository and computational platform. The ultimate goal is to accelerate broader coordination and data sharing among researchers by enabling storage, management, sharing and analysis of NMR data.
https://nmrxiv.org
MIT License
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Add missing profiles and properties from (bio)schema to the tables #191

Closed NRayya closed 2 years ago

NRayya commented 2 years ago

Looking into the tables provided here: https://github.com/NFDI4Chem/nmrxiv/tree/development/database/migrations: The tables that are available:

The tables that are missing:

NRayya commented 2 years ago

MolecularEntity: https://github.com/NFDI4Chem/schema/blob/main/bioschema/MolecularEntity.ipynb https://github.com/NFDI4Chem/nmrxiv/blob/development/database/migrations/2022_06_15_090904_create_molecules_table.php

[ ] CHEBI id [ ] url to the substance in CHEBI [ ] IUPAC name

[ ] chemicalRole from an ontology, we need: [ ] ontology details including link to the ontology, the name of the ontology [ ] term details including link to the value, the value itself, termCode such as "CHEBI:46787"

NRayya commented 2 years ago

Dataset https://github.com/NFDI4Chem/schema/blob/main/bioschema/Dataset.ipynb https://github.com/NFDI4Chem/nmrxiv/blob/development/database/migrations/2022_05_22_193428_create_datasets_table.php

NRayya commented 2 years ago

Sample https://github.com/NFDI4Chem/schema/blob/main/bioschema/Sample.ipynb https://github.com/NFDI4Chem/nmrxiv/blob/development/database/migrations/2022_06_17_094735_create_samples_table.php

NRayya commented 2 years ago

Study https://github.com/NFDI4Chem/schema/blob/main/bioschema/Study.ipynb

NRayya commented 2 years ago

Closed in favor of updated issue https://github.com/NFDI4Chem/nmrxiv/issues/393