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NGSEP / NGSEPcore

NGSEP is an integrated framework for analysis of high throughput sequencing (HTS) reads. The main functionality of NGSEP is the variants detector, which allows to make integrated discovery and genotyping of Single Nucleotide Variants (SNVs), insertions, deletions, and genomic regions with copy number variation (CNVs).
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Can I use CDNACatalogAligner to cluster DNA (not CDNA) sequences? #44

Closed xiekunwhy closed 1 year ago

xiekunwhy commented 1 year ago

Hi,

Can I use CDNACatalogAligner to cluster DNA sequences (not CDNA, like LTR) into families?

Best, Kun

jduitama commented 1 year ago

Dear Kun

Thanks for your interest in NGSEP. My apologies for the delayed answer. By now, only protein coding genes can be clustered using this functionality. However, we plan to consider transposable elements for future versions of this functionality.

Best regards

Jorge