The NDEx Project provides an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge.
One of the goals of the project is to create a home for models that are currently available only as figures, tables, or supplementary information, such as networks produced via systematic mining and integration of large-scale molecular data.
The NDEx project does not compete with existing pathway and interaction databases, such as Pathway Commons, KEGG, or Reactome; instead, NDEx provides a novel, common distribution channel for these efforts, preserving their identity and attribution rather than subsuming them.
Source Abstract
The Network Data Exchange (NDEx) is a NIH supported generalist repository that includes generalist data.
Source Genre
generalist
Source Access
No access issue, account not needed for publicly-accessible records. Many (but not all) Network records have enough overlapping metadata fields for inclusion as "Dataset" records; however, this will not include properties exclusive to a Pathway/Network type class.
This source was prioritized for inclusion by the NIAID/ODSET team. Additionally, the source maintainers have expressed interest in integrating with the Discovery Portal
Source Name
The Network Data Exchange (NDEx)
Source URL
https://www.ndexbio.org/index.html#/
Source Description
The NDEx Project provides an open-source framework where scientists and organizations can store, share, manipulate, and publish biological network knowledge. One of the goals of the project is to create a home for models that are currently available only as figures, tables, or supplementary information, such as networks produced via systematic mining and integration of large-scale molecular data. The NDEx project does not compete with existing pathway and interaction databases, such as Pathway Commons, KEGG, or Reactome; instead, NDEx provides a novel, common distribution channel for these efforts, preserving their identity and attribution rather than subsuming them.
Source Abstract
The Network Data Exchange (NDEx) is a NIH supported generalist repository that includes generalist data.
Source Genre
generalist
Source Access
No access issue, account not needed for publicly-accessible records. Many (but not all) Network records have enough overlapping metadata fields for inclusion as "Dataset" records; however, this will not include properties exclusive to a Pathway/Network type class.
Example Network records
Source Funding
National Institutes of Health [U24CA184427]
Source Relevance
This source was prioritized for inclusion by the NIAID/ODSET team. Additionally, the source maintainers have expressed interest in integrating with the Discovery Portal
Related WBS task
For internal use only. Assignee, please select the status of this issue
Status Description
No response
Source to-do list