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NIH-NCPI / FHIR-CAT-June22

Technical interop pilot using RNASeq data
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[GTEx] Identify FHIR DocumentReferences for Gene Expression Summary files #9

Closed RobertJCarroll closed 2 years ago

RobertJCarroll commented 2 years ago

Save JSON containing all DocumentReferences for GTEx Gene Expression Summary files into this bucket: https://console.cloud.google.com/storage/browser/fc-be286b9f-3acf-4168-af6e-592df509391d/DocumentReference gs://fc-be286b9f-3acf-4168-af6e-592df509391d/DocumentReference

torstees commented 2 years ago

The following query will pull the RNA specific DocumentReferences from GTEx. There are no type codes currently associated with the data so the query is only suitable because this is the only type of data we have inside the FHIR server:

https://healthcare.googleapis.com/v1/projects/ncpi-fhir-cat-2022/locations/us-central1/datasets/GTEx_Open_Access/fhirStores/gtex_v8.2/fhir/category=RNA-Seq&location:missing=false

RobertJCarroll commented 2 years ago

See #12