UC 13: Leverage functionally equivalent pipelines for long-reads data on different systems

NIH-NCPI / NCPI_use_case_tracker

This repo is for tracking NCPI interoperability use cases.

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UC 13: Leverage functionally equivalent pipelines for long-reads data on different systems #15

Open jackDiGi opened 3 years ago

jackDiGi commented 3 years ago

Working with Owen Hirschi and Mike Schatz to finalize this use case.

Curated various email threads and discussions into a draft one pager - under revisions in google docs. Will post here once finalized.

jackDiGi commented 3 years ago

very late posting, but this is the one-pager completed on 13 July 2021

cottonva commented 3 years ago

Platforms involved: AnVIL & Kids First scientific lead: Owen Hirschi & Sharon Plon Platform lead: Mike Schatz & Jack DiGiovanna One pager description: what research question to be answered, plan of data use and analysis - Specify the NCPI interoperability use case: https://commonfund.nih.gov/kidsfirst/longreadprojects Funding resources: Kids First DRC parent award + Kids First sequencing centers

linikujp commented 2 years ago

Changed the label to "need one pager", as the link to specify NCPI interoperability use case is not clear. @cottonva

jackDiGi commented 2 years ago

the one-pager is available - linked in a comment on Sept 3 @linikujp

linikujp commented 2 years ago

@jackDiGi can you double check if the interoperability use case tech plan is complete. See my comment on Oct 6.

jackDiGi commented 2 years ago

Interop use case is as a researcher, I want to run the same tool on multiple environments (federated, functionally-equivalent compute), such that I can analyze datasets which are restricted to specific locations.

The such that could also be

my analysis is more efficient
my egress charges / effort / logistics are minimized
my costs are distributed among multiple funding sources

Does this capture what's missing @linikujp & @NoopDog