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NIH-NCPI / NCPI_use_case_tracker

This repo is for tracking NCPI interoperability use cases.
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UC 9. Whole slide images #9

Open NoopDog opened 3 years ago

NoopDog commented 3 years ago

Interop Contact: Jonas Almeida Active in 2021: Active

We have developed a tile server to decouple image analysis from its storage [PMID1234, demo at https://episphere.github.io/svs]. This is now being hardened as a Google marketplace service by STRIDES professional services by Google. Web applications are under active development to annotate morphology to train AI classifiers via AutoML. This architecture was shown to work well to call WSI tiles from multiple public and also private repositories (private repositories rely on bearer tokens to verify the HTTP range-request calls). It would be great if the range-request tile serving mechanism will work with Image Data Commons. The goal of this use-case is to demonstrate/establishing interoperability such that IDC would respond to range-requests authorized by passing a bearer token just like those other backends in use at NIH (S3 buckets, GCP buckets, box.com etc).

Researchers:

Jonas Almeida Praphulla Bhawsar, Mustapha Abubakar

jackDiGi commented 3 years ago

Excellent, is there a milestone that can be presented at the Fall 2021 NCPI meeting?

jackDiGi commented 2 years ago

per discussion with @linikujp this morning, this use case will not be presented at the Fall NCPI meeting.