NJCoast / cyberspatial

NJCoast CyberSpatial Framework based on GeoNode
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GeoServer Memory Issue #256

Closed Omegaice closed 6 years ago

Omegaice commented 6 years ago

26-Jun-2018 15:11:26.970 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server version: Apache Tomcat/9.0.6 26-Jun-2018 15:11:26.974 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server built: Mar 5 2018 09:34:35 UTC 26-Jun-2018 15:11:26.974 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Server number: 9.0.6.0 26-Jun-2018 15:11:26.974 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Name: Linux 26-Jun-2018 15:11:26.974 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log OS Version: 4.4.0-128-generic 26-Jun-2018 15:11:26.975 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Architecture: amd64 26-Jun-2018 15:11:26.975 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Java Home: /usr/lib/jvm/java-8-openjdk-amd64/jre 26-Jun-2018 15:11:26.975 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Version: 1.8.0_162-8u162-b12-1~deb9u1-b12 26-Jun-2018 15:11:26.975 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log JVM Vendor: Oracle Corporation 26-Jun-2018 15:11:26.975 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_BASE: /usr/local/tomcat 26-Jun-2018 15:11:26.976 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log CATALINA_HOME: /usr/local/tomcat 26-Jun-2018 15:11:26.976 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.config.file=/usr/local/tomcat/conf/logging.properties 26-Jun-2018 15:11:26.976 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.util.logging.manager=org.apache.juli.ClassLoaderLogManager 26-Jun-2018 15:11:26.977 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djdk.tls.ephemeralDHKeySize=2048 26-Jun-2018 15:11:26.977 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.protocol.handler.pkgs=org.apache.catalina.webresources 26-Jun-2018 15:11:26.977 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Xss16384k 26-Jun-2018 15:11:26.977 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dignore.endorsed.dirs= 26-Jun-2018 15:11:26.977 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.base=/usr/local/tomcat 26-Jun-2018 15:11:26.978 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Dcatalina.home=/usr/local/tomcat 26-Jun-2018 15:11:26.978 INFO [main] org.apache.catalina.startup.VersionLoggerListener.log Command line argument: -Djava.io.tmpdir=/usr/local/tomcat/temp 26-Jun-2018 15:11:26.978 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent Loaded APR based Apache Tomcat Native library [1.2.16] using APR version [1.5.2]. 26-Jun-2018 15:11:26.978 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent APR capabilities: IPv6 [true], sendfile [true], accept filters [false], random [true]. 26-Jun-2018 15:11:26.978 INFO [main] org.apache.catalina.core.AprLifecycleListener.lifecycleEvent APR/OpenSSL configuration: useAprConnector [false], useOpenSSL [true] 26-Jun-2018 15:11:27.031 INFO [main] org.apache.catalina.core.AprLifecycleListener.initializeSSL OpenSSL successfully initialized [OpenSSL 1.1.0f 25 May 2017] 26-Jun-2018 15:11:27.331 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["http-nio-8080"] 26-Jun-2018 15:11:27.428 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read 26-Jun-2018 15:11:27.445 INFO [main] org.apache.coyote.AbstractProtocol.init Initializing ProtocolHandler ["ajp-nio-8009"] 26-Jun-2018 15:11:27.447 INFO [main] org.apache.tomcat.util.net.NioSelectorPool.getSharedSelector Using a shared selector for servlet write/read 26-Jun-2018 15:11:27.448 INFO [main] org.apache.catalina.startup.Catalina.load Initialization processed in 2517 ms 26-Jun-2018 15:11:27.525 INFO [main] org.apache.catalina.core.StandardService.startInternal Starting service [Catalina] 26-Jun-2018 15:11:27.526 INFO [main] org.apache.catalina.core.StandardEngine.startInternal Starting Servlet Engine: Apache Tomcat/9.0.6 26-Jun-2018 15:11:27.549 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/ROOT] 26-Jun-2018 15:11:47.776 WARNING [main] org.apache.catalina.util.SessionIdGeneratorBase.createSecureRandom Creation of SecureRandom instance for session ID generation using [SHA1PRNG] took [19,110] milliseconds. 26-Jun-2018 15:11:47.844 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/ROOT] has finished in [20,295] ms 26-Jun-2018 15:11:47.845 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/docs] 26-Jun-2018 15:11:47.878 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/docs] has finished in [33] ms 26-Jun-2018 15:11:47.879 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/manager] 26-Jun-2018 15:11:47.989 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/manager] has finished in [109] ms 26-Jun-2018 15:11:47.989 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/examples] 26-Jun-2018 15:11:49.570 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/examples] has finished in [1,581] ms 26-Jun-2018 15:11:49.571 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/host-manager] 26-Jun-2018 15:11:49.769 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/host-manager] has finished in [197] ms 26-Jun-2018 15:11:49.769 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deploying web application directory [/usr/local/tomcat/webapps/geoserver] 26-Jun-2018 15:12:16.796 SEVERE [main] org.apache.catalina.core.ContainerBase.addChildInternal ContainerBase.addChild: start: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/geoserver]] at org.apache.catalina.util.LifecycleBase.handleSubClassException(LifecycleBase.java:441) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:198) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:742) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:718) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:703) at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1142) at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1876) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:112) at org.apache.catalina.startup.HostConfig.deployDirectories(HostConfig.java:1054) at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:428) at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1586) at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:308) at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123) at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:424) at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:367) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:966) at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:839) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1427) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1417) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:134) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:943) at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:258) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183) at org.apache.catalina.core.StandardService.startInternal(StandardService.java:422) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183) at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:770) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183) at org.apache.catalina.startup.Catalina.start(Catalina.java:682) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:353) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:493) Caused by: java.lang.IllegalStateException: Unable to complete the scan for annotations for web application [/geoserver] due to a StackOverflowError. Possible root causes include a too low setting for -Xss and illegal cyclic inheritance dependencies. The class hierarchy being processed was [org.bouncycastle.asn1.ASN1EncodableVector->org.bouncycastle.asn1.DEREncodableVector->org.bouncycastle.asn1.ASN1EncodableVector] at org.apache.catalina.startup.ContextConfig.checkHandlesTypes(ContextConfig.java:2139) at org.apache.catalina.startup.ContextConfig.processAnnotationsStream(ContextConfig.java:2083) at org.apache.catalina.startup.ContextConfig.processAnnotationsJar(ContextConfig.java:2029) at org.apache.catalina.startup.ContextConfig.processAnnotationsUrl(ContextConfig.java:1999) at org.apache.catalina.startup.ContextConfig.processAnnotations(ContextConfig.java:1952) at org.apache.catalina.startup.ContextConfig.webConfig(ContextConfig.java:1156) at org.apache.catalina.startup.ContextConfig.configureStart(ContextConfig.java:765) at org.apache.catalina.startup.ContextConfig.lifecycleEvent(ContextConfig.java:299) at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123) at org.apache.catalina.core.StandardContext.startInternal(StandardContext.java:4939) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183) ... 38 more

26-Jun-2018 15:12:16.804 SEVERE [main] org.apache.catalina.startup.HostConfig.deployDirectory Error deploying web application directory [/usr/local/tomcat/webapps/geoserver] java.lang.IllegalStateException: ContainerBase.addChild: start: org.apache.catalina.LifecycleException: Failed to start component [StandardEngine[Catalina].StandardHost[localhost].StandardContext[/geoserver]] at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:746) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:718) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:703) at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:1142) at org.apache.catalina.startup.HostConfig$DeployDirectory.run(HostConfig.java:1876) at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:112) at org.apache.catalina.startup.HostConfig.deployDirectories(HostConfig.java:1054) at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:428) at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1586) at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:308) at org.apache.catalina.util.LifecycleBase.fireLifecycleEvent(LifecycleBase.java:123) at org.apache.catalina.util.LifecycleBase.setStateInternal(LifecycleBase.java:424) at org.apache.catalina.util.LifecycleBase.setState(LifecycleBase.java:367) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:966) at org.apache.catalina.core.StandardHost.startInternal(StandardHost.java:839) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1427) at org.apache.catalina.core.ContainerBase$StartChild.call(ContainerBase.java:1417) at java.util.concurrent.FutureTask.run(FutureTask.java:266) at org.apache.tomcat.util.threads.InlineExecutorService.execute(InlineExecutorService.java:75) at java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:134) at org.apache.catalina.core.ContainerBase.startInternal(ContainerBase.java:943) at org.apache.catalina.core.StandardEngine.startInternal(StandardEngine.java:258) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183) at org.apache.catalina.core.StandardService.startInternal(StandardService.java:422) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183) at org.apache.catalina.core.StandardServer.startInternal(StandardServer.java:770) at org.apache.catalina.util.LifecycleBase.start(LifecycleBase.java:183) at org.apache.catalina.startup.Catalina.start(Catalina.java:682) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:498) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:353) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:493)

26-Jun-2018 15:12:16.807 INFO [main] org.apache.catalina.startup.HostConfig.deployDirectory Deployment of web application directory [/usr/local/tomcat/webapps/geoserver] has finished in [27,037] ms 26-Jun-2018 15:12:16.859 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["http-nio-8080"] 26-Jun-2018 15:12:16.871 INFO [main] org.apache.coyote.AbstractProtocol.start Starting ProtocolHandler ["ajp-nio-8009"] 26-Jun-2018 15:12:16.876 INFO [main] org.apache.catalina.startup.Catalina.start Server startup in 49428 ms

charlesvardeman commented 6 years ago

GeoNode saw this same error in Issue 17. It looks like the fix is to set org.apache.catalina.startup.ContextConfig.jarsToSkip=bcprov*.jar

Omegaice commented 6 years ago

Fixed by implementing this