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NKI-AI / ahcore

Ahcore is the AI for Oncology core computational pathology toolkit
Apache License 2.0
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Implement AhcoreJITModel, H5TileFeatureWriter #65

Closed AjeyPaiK closed 5 months ago

AjeyPaiK commented 6 months ago

This PR makes the following changes:

  1. ahcore can now incorporate any arbitary deep learning models without additional dependencies via the AhcoreJitModel. Any model compiled using JIT can be used here.

This PR fixes issues #67

AjeyPaiK commented 6 months ago

One nice thing to note is that I converted the foreground background model from @moerlemans and ran an inference loop on some of my images using the JIT compiled model. Below are the outputs

image image

AjeyPaiK commented 5 months ago

These have been implemented in fresh PRs