NKI-AI / ahcore

Ahcore is the AI for Oncology core computational pathology toolkit
Apache License 2.0
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ahcore prediction doesn't end properly #92

Open AjeyPaiK opened 2 months ago

AjeyPaiK commented 2 months ago

Describe the bug I submitted a job to the compute cluster last week to run some segmentation inference. While the inference successfully completed, the job was never terminated. It was terminated after the walltime I requested ran out (check below). So, the process was idle for more than 3 days! image

To Reproduce run segmentation inference using the top branch of ahcore.

Expected behavior The main process during segmentation inference should terminate once everything is finalised.

Environment dlup version: 0.4.0 How installed: pip Python version: 3.11.0 Operating System: Linux

Additional context N/A