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NKI-AI / dlup

Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute
Apache License 2.0
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I want a feature to tile the whole WSI by disabling the FESI, improved FESI algorithms. #56

Closed AjeyPaiK closed 2 years ago

AjeyPaiK commented 2 years ago

Currently, the tiling feature works on the regions of WSI where the FESI or improved FESI algorithms find foreground. This cannot be overridden to have tiling on the whole WSI (including the background regions).

We can have the same tiling scheme that exists now but for the whole image instead of just foreground regions.

Additional context This is especially useful when writing routines during segmentation model validation. The models are expected to not segment anything in the background.

jonasteuwen commented 2 years ago

I think this should do it: https://github.com/NKI-AI/dlup/commit/5d9ac87685b76404ac52d64dd85d72fd72177604

github-actions[bot] commented 2 years ago

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