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NKI-CCB / ppbc

Post-partum breast cancer
MIT License
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Merge src/utils/outcome.R with src/spatial/process_density_outcomes.R #9

Closed ksm113 closed 2 years ago

ksm113 commented 2 years ago

Handy to have just one function for processing outcome data, now that we have a "final" metadata file. outcome.R is the more robust of the two existing options and will also be used in the RNAseq pipeline post refactor. Both run and produce the desired result; low priority task.

ksm113 commented 2 years ago

Nevermind, there's too many sanity checks in outcome.R to make it applicable to RNAseq, CD38, and HE slides without excessive complication.