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NLeSC / homebrew-nlesc

Homebrew formulae for NLeSC projects and dependencies.
Apache License 2.0
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hdf5 installation issue #3

Open Sbte opened 3 years ago

Sbte commented 3 years ago 
...
/usr/local/include/h5tb_const.mod -> /usr/local/Cellar/hdf5-mpi/1.12.0_1/include/h5tb_const.mod
/usr/local/include/h5vl.mod -> /usr/local/Cellar/hdf5-mpi/1.12.0_1/include/h5vl.mod
/usr/local/include/h5z.mod -> /usr/local/Cellar/hdf5-mpi/1.12.0_1/include/h5z.mod
/usr/local/include/hdf5.h -> /usr/local/Cellar/hdf5-mpi/1.12.0_1/include/hdf5.h
/usr/local/include/hdf5.mod -> /usr/local/Cellar/hdf5-mpi/1.12.0_1/include/hdf5.mod
/usr/local/include/hdf5_hl.h -> /usr/local/Cellar/hdf5-mpi/1.12.0_1/include/hdf5_hl.h
Error: Could not symlink share/hdf5_examples/README
Target /usr/local/share/hdf5_examples/README
is a symlink belonging to hdf5-mpi. You can unlink it:
  brew unlink hdf5-mpi

To force the link and overwrite all conflicting files:
  brew link --overwrite hdf5-mpi

To list all files that would be deleted:
  brew link --overwrite --dry-run hdf5-mpi
Sbte commented 3 years ago 
% brew list
==> Formulae
autoconf    bison       freetype    git     hdf5        isl     libevent    libpng      m4      mpfr        nghttp2     openssl@1.1 pcre2       slicot      trilinos
automake    c-ares      gcc     gmp     hdf5-mpi    jansson     libffi      libtasn1    metis       ncurses     numpy       p11-kit     pkg-config  sqlite      unbound
bash-completion cmake       gdbm        gnutls      htop        jemalloc    libidn2     libtool     mingw-w64   netcdf-mpi  open-mpi    parmetis    python@3.9  swig        xz
bdw-gc      emacs       gettext     guile       hwloc       libev       libmpc      libunistring    mpdecimal   nettle      openblas    pcre        readline    szip        zstd