search_scopus issues

[judiths1618]

Hi, there're some problems with me when i run the code cell with

scopus_query = 'title-abs-key(medical data sharing)'
docset = litstudy.search_scopus(scopus_query, docset)

In detail, it gave me the tips with

---

Scopus401Error Traceback (most recent call last) in 4 5 scopus_query = 'title-abs-key(medical data sharing)' ----> 6 docset = litstudy.search_scopus(scopus_query, docset)

c:\Users\Judiths\Desktop\CLARIFY survey\automated-literature-analysis\litstudy\search.py in search_scopus(query, docs, retrieve_orcid) 78 affiliations_cache = {} 79 try: ---> 80 retrieved_paper_ids = ScopusSearch(query, view="STANDARD").get_eids() 81 except ScopusQueryError: 82 print("Impossible to process query \"{}\".".format(query))

c:\users\judiths\anaconda3\envs\mysurvey\lib\site-packages\pybliometrics\scopus\scopus_search.py in init(self, query, refresh, subscriber, view, download, integrity_fields, integrity_action, verbose, kwds) 195 Search.init(self, query=query, api='ScopusSearch', refresh=refresh, 196 count=count, cursor=subscriber, view=view, --> 197 download=download, verbose=verbose, kwds) 198 self.integrity = integrity_fields or [] 199 self.action = integrity_action

c:\users\judiths\anaconda3\envs\mysurvey\lib\site-packages\pybliometrics\scopus\classes\search.py in init(self, query, api, refresh, view, count, max_entries, cursor, download, verbose, kwds) 77 params.update({'start': 0}) 78 # Download results ---> 79 res = cache_file(url=SEARCH_URL[api], params=params, kwds).json() 80 n = int(res['search-results'].get('opensearch:totalResults', 0)) 81 self._n = n

c:\users\judiths\anaconda3\envs\mysurvey\lib\site-packages\pybliometrics\scopus\utils\get_content.py in cache_file(url, params, **kwds) 74 except: 75 reason = "" ---> 76 raise errorsresp.status_code 77 else: 78 resp.raise_for_status()

Scopus401Error: Invalid API Key

i have successfully installed the python virtual environment, but it's wrong when i run the code. i don't know if it's the code bugs or not. if you know the reasons why it happened, could you please answer me?

[isazi]

Hi, does the error occur only with this query or with any query?

[judiths1618]

Hi, I tried other query (key words) scopus_query = 'title-abs-key(cloud computing)' scopus_query = 'title-abs-key(workflow scheduling)'

The error still occur.

Sincerely, Yuandou Wang

发件人: Alessio Scloccomailto:notifications@github.com 发送时间: 2020年4月30日 16:14 收件人: NLeSC/automated-literature-analysismailto:automated-literature-analysis@noreply.github.com 抄送: judiths1618mailto:judiths11@outlook.com; Authormailto:author@noreply.github.com 主题: Re: [NLeSC/automated-literature-analysis] search_scopus issues (#4)

Hi, does the error occur only with this query or with any query?

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[isazi]

Another question, can you try to execute the included python notebook? The file is literature_analysis.ipynb

[isazi]

I'll close this one for one, feel free to reopen it if you have again problems.

[judiths1618]

Hi, do you know the “Scopus400Error” ? Recently, I git clone your project on the centos and executed the jupyter notebook on the server with configuration of the .scopus APIkey, the before problem seems to be solved. However, another issue happened, in detail, the results are like this: [cid:image002.png@01D6250F.BB5D4F40] I checked the search API of the scopus and the query, neither of them are wrong. Can you help me with the problem?

Sincerely, Yuandou Wang

发件人: Alessio Scloccomailto:notifications@github.com 发送时间: 2020年5月7日 20:55 收件人: NLeSC/automated-literature-analysismailto:automated-literature-analysis@noreply.github.com 抄送: judiths1618mailto:judiths11@outlook.com; Authormailto:author@noreply.github.com 主题: Re: [NLeSC/automated-literature-analysis] search_scopus issues (#4)

Closed #4https://github.com/NLeSC/automated-literature-analysis/issues/4.

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[judiths1618]

Hi, I have known the reasons why I got such problems:

1) Didn’t correctly configure the .scopus/config.ini with the APIKey;

2) Didn’t access to “ScopusSearch” with an accessible network of the University (institution).

Well, after I solved the above problems, it seems to me that everything works well.

Sincerely, Yuandou Wang

发件人: Alessio Scloccomailto:notifications@github.com 发送时间: 2020年5月7日 20:55 收件人: NLeSC/automated-literature-analysismailto:automated-literature-analysis@noreply.github.com 抄送: judiths1618mailto:judiths11@outlook.com; Authormailto:author@noreply.github.com 主题: Re: [NLeSC/automated-literature-analysis] search_scopus issues (#4)

I'll close this one for one, feel free to reopen it if you have again problems.

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[isazi]

Thank for letting us know. Bye!

[judiths1618]

you are welcome. bye bye~

从Outlook Email App的Android专用app所发送 星期五, 08 五月 2020, 04:47下午 +08:00 发件人 Alessio Sclocco notifications@github.com :

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