NLeSC / litstudy

LitStudy: Using the power of Python to automate scientific literature analysis from the comfort of a Jupyter notebook
https://nlesc.github.io/litstudy/
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'No Edges Given' for Network Analysis #64

Open SS159 opened 12 months ago

SS159 commented 12 months ago

'No edges given' is output instead of co-citation network analysis.

image

Any ideas why this might be happening?

Thanks,

S

stijnh commented 12 months ago

Thanks for using litstudy and thanks for creating this issue.

You're loading data from a CSV file and this data does not store the paper bibliography.

You can use either refine_crossref(docs_springer) or refine_scopus(docs_springer) to look up the papers on Scopus or Crossref. This will add the paper bibliography. You can pass the result of the refine functions to plot_cocitation_network

SS159 commented 11 months ago

Thanks for the response.

Unfortunately, enriching paper metadata via the Scopus API key still doesn't work for me - it returns the same 'Scopus400 Error' as before and raising the query directly with Pybliometrics did not resolve the issue. So looks like co-citation network output of LitStudy won't be possible in my case, as we don't have the information required to plot it.

S

Samuel Stevenson | Research Assistant

Grantham Institute - Climate Change and the Environment

Imperial College London, Exhibition Road, London SW7 2AZ

Tel: +44 (0)20 7594 9666

Email: @.**@.>

Grantham Institute: World class research that makes a difference

Web: www.imperial.ac.uk/granthamhttp://www.imperial.ac.uk/grantham | Twitter: @Grantham_IChttps://twitter.com/Grantham_IC

Find out more about our research and activities in the Grantham Institute Outlook 2019-20http://www.imperial.ac.uk/grantham/publications/grantham-institute-outlook-2019-20.php?utm_source=email-signature


From: Stijn @.> Sent: 14 November 2023 17:44 To: NLeSC/litstudy @.> Cc: Stevenson, Samuel A @.>; Author @.> Subject: Re: [NLeSC/litstudy] 'No Edges Given' for Network Analysis (Issue #64)

This email from @.*** originates from outside Imperial. Do not click on links and attachments unless you recognise the sender. If you trust the sender, add them to your safe senders listhttps://spam.ic.ac.uk/SpamConsole/Senders.aspx to disable email stamping for this address.

Thanks for using litstudy and thanks for creating this issue.

You're loading data from a CSV file and this data does not store the paper bibliography.

You can use either refine_crossref(docs_springer) or refine_scopus(docs_springer) to look up the papers on Scopus or Crossref. This will add the paper bibliography. You can pass the result of the refine functions to plot_cocitation_network

— Reply to this email directly, view it on GitHubhttps://github.com/NLeSC/litstudy/issues/64#issuecomment-1810797922, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AONMFT6MM5AIW5XF3WNMTRLYEOUXDAVCNFSM6AAAAAA7JDDYCCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMJQG44TOOJSGI. You are receiving this because you authored the thread.Message ID: @.***>

stijnh commented 11 months ago

Did you try refine_crossref? Crossref is open and should also include the references to allow a citation network to be built

SS159 commented 11 months ago

I did but got the below NameError - is it not already within LitStudy?/Where should 'refine_crossref' be used?

[cid:28c3af0e-465c-4ce1-93ce-f18cd547e2c7]

Samuel Stevenson | Research Assistant

Grantham Institute - Climate Change and the Environment

Imperial College London, Exhibition Road, London SW7 2AZ

Tel: +44 (0)20 7594 9666

Email: @.**@.>

Grantham Institute: World class research that makes a difference

Web: www.imperial.ac.uk/granthamhttp://www.imperial.ac.uk/grantham | Twitter: @Grantham_IChttps://twitter.com/Grantham_IC

Find out more about our research and activities in the Grantham Institute Outlook 2019-20http://www.imperial.ac.uk/grantham/publications/grantham-institute-outlook-2019-20.php?utm_source=email-signature


From: Stijn @.> Sent: 27 November 2023 11:12 To: NLeSC/litstudy @.> Cc: Stevenson, Samuel A @.>; Author @.> Subject: Re: [NLeSC/litstudy] 'No Edges Given' for Network Analysis (Issue #64)

This email from @.*** originates from outside Imperial. Do not click on links and attachments unless you recognise the sender. If you trust the sender, add them to your safe senders listhttps://spam.ic.ac.uk/SpamConsole/Senders.aspx to disable email stamping for this address.

Did you try refine_crossref? Crossref is open and should also include the references to allow a citation network to be built

— Reply to this email directly, view it on GitHubhttps://github.com/NLeSC/litstudy/issues/64#issuecomment-1827628165, or unsubscribehttps://github.com/notifications/unsubscribe-auth/AONMFTZQSKTF5GW4BFTSNFDYGRYSZAVCNFSM6AAAAAA7JDDYCCVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQMRXGYZDQMJWGU. You are receiving this because you authored the thread.Message ID: @.***>