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NLeSC / scriptcwl

Create cwl workflows by writing a simple Python script
https://scriptcwl.readthedocs.io/
Apache License 2.0
40 stars 9 forks source link

First load tools, then workflows to prevent warnings #94

Open jvdzwaan opened 6 years ago

jvdzwaan commented 6 years ago

When using the working_dir option.

If a workflow is copied before all of its steps, warnings are issued, because not all files used in the run field can be found. The warnings can be prevented by first copying tools and then workflows.

jvdzwaan commented 6 years ago

If a workflow is used as a subworkflow it must be loaded before the workflow it is a subworkflow in. This is an additional problem.