search

NMRLipids / lipid_ionINTERACTION

Files related to the NMRlipids II project
GNU General Public License v2.0
1 stars 9 forks source link

Suggestions for 2.3 #56

Closed markussmiettinen closed 8 years ago

markussmiettinen commented 8 years ago

Particular points:

1) Clarified the comment of CHARMM36 Ca2+ binding affinity (pointing out that this simulation was long, which implies we do not really know for sure if the other models (save Slipids) would also bind all the Ca2+:s, should we simulate for 2 us.)

2) Clarified the text concerning Cordomi's paper.

3) Added note that Yoo's model forces the Ca2+:s to always remain hydrated.

ohsOllila commented 8 years ago

Is "heptahydrated" a known term?

jmelcr commented 8 years ago

You understand it very intuitively. Heptahydrate is a common term, Heptahydtated is its derivate.

Dne 6.10.2016 11:08 napsal uživatel "ohsOllila" notifications@github.com:

Is "heptahydrated" a known term?

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/NMRLipids/lipid_ionINTERACTION/pull/56#issuecomment-251907419, or mute the thread https://github.com/notifications/unsubscribe-auth/AMMLDCjO_E3QAsa2HrK6U9esEkYHSiSvks5qxLqEgaJpZM4KPrpa .

markussmiettinen commented 8 years ago

I would say heptahydrated is easily understandable.

The thing is that the Yoo model has those seven (hepta) waters bonded to each calcium, which is not something people will expect to be the case. My thinking was that by having the word heptahydrated there will alert the reader to this peculiarity of the model.