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NOAA-EDAB / atlantisdrive

https://noaa-edab.github.io/atlantisdrive/
https://noaa-edab.github.io/atlantisdrive/
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include input files in drive output folder #2

Open andybeet opened 4 years ago

andybeet commented 4 years ago

atlantisom requires atlantis input and parameter files.

We should also include these in the google drive output folder

sgaichas commented 4 years ago

The input/parameter files don't always have standardized names. They are (Norwegian-Barents example):

functional.groups.file <- "nordic_groups_v04.csv"              (input: neus_groups.csv)
biomass.pools.file <- "nordic_biol_v23.nc"                     (output: neus_output.nc)
biol.prm.file <- "nordic_biol_incl_harv_v_007_3.prm"           (input: at_biology.prm)
box.file <- "Nordic02.bgm"                              (input/output: neus_tmerc_rm2.bgm)
initial.conditions.file <- "nordic_biol_v23.nc"             (input neus_init.nc)
run.prm.file <- "nordic_run_v01.xml"                             (output: at_run.xml)
fishery.def.file <- "NoBAFisheries.csv"                (input: neus_fisheries.csv)
fishery.prm.file <- "nordic_harvest_v_2_4_stock_assess.prm"      (input: at_harvest.prm)
andybeet commented 4 years ago

@sgaichas ok. will check with @gambler1650 and @jcaracappa1 to make sure we identify these and possibly come up with some naming convention