NAs introduced in herring pull

[slucey]

Investigate what is causing the warning:

Warning message:
In lapply(.SD, as.numeric) : NAs introduced by coercion

Seems to enter from get_herring_data function.

[sgaichas]

Herring come in with the get_comlandr_raw function and are replaced in the get_herring_data function but this results in fewer rows, need to compare the two outputs with herring catch data in assessment.

[sgaichas]

Datasets pulled using get_comland_raw and get_herring_data using code in herringtest.Rmd, stored on work3/EDAB/VAST_indices/testcomlandr:

• comland_raw.rds is the full raw comland pull
• comland_raw_herring.rds is the subset: comland_raw[NESPP3 == 168, ]
• herring.rds is the output of get_herring_data up to the point where it would replace the subset above

some interim datasets are saved:

• herring_catch.rds is the raw pull from NEFSC_GARFO.maine_herring_catch
• herring_price.rds is the price calculated from comland_raw_herring
• herring_util.rds is the utilization code pulled from comland_raw_herring (need to verify)

Next steps, I'll go through these to see where they differ

[sgaichas]

added some initial comparisons and questions in the discussion board