Add 'j-jobs' for UFS DA

NOAA-EMC / JEDI-T2O

JEDI Transition to Operations activities.

GNU Lesser General Public License v2.1

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Add 'j-jobs' for UFS DA #14

Closed CoryMartin-NOAA closed 2 years ago

CoryMartin-NOAA commented 2 years ago

Closes #7

Adds three j-jobs for UFS DA: prep, run, post.

prep: calls a python ex-script to create YAML and stage obs, backgrounds, fix files, etc
run: calls a shell script to run fv3jedi_var.x and then update analysis fields
post: calls a python script to concatenate diag files and save them in R2D2;

CoryMartin-NOAA commented 2 years ago

Thanks @RussTreadon-NOAA , are the job names more what you were looking for? I agree the backticks should be replaced to be consistent, and I think that has been now fixed too.

CoryMartin-NOAA commented 2 years ago

after talking with @aerorahul , I have consolidated these into just one j-job, and the unique things will be passed via environment variables (configs and ex-script path)