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NOAA-EMC / hpc-stack

Create a software stack for HPC's
GNU Lesser General Public License v2.1
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gnu/9.2.0 hpc/1.1.0 sigio/2.3.2 library missing on Hera #483

Closed MichaelLueken closed 1 year ago

MichaelLueken commented 1 year ago

Describe the bug While attempting to build the GSI on Hera using gnu/9.2.0, the build failed with the following message:

CMake Error at src/gsi/CMakeLists.txt:66 (find_package):
  By not providing "Findsigio.cmake" in CMAKE_MODULE_PATH this project has
  asked CMake to find a package configuration file provided by "sigio", but
  CMake did not find one.

  Could not find a package configuration file provided by "sigio" with any of
  the following names:

    sigioConfig.cmake
    sigio-config.cmake

Following a module show sigio/2.3.2, I looked in:

/scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2/

and there is no lib, include, or cmake directory present. In fact, this directory is completely empty.

To Reproduce Steps to reproduce the behavior:

1) Clone the GSI repo - git clone --recursive git@github.com:NOAA-EMC/GSI.git 2) cd ush 3) Change COMPILER=${COMPILER:-"intel"} to COMPILER=${COMPILER:-"gnu"} in build.sh 4) Compile using ./build.sh

Expected behavior The GSI should be able to find the cmake, include, and lib directories in /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2/ and the code should compile without issue (the GSI was building using hpc/1.1.0 hpc-gnu/9.2.0 last Monday, August 15).

System: This issue has been identified on Hera.

Hang-Lei-NOAA commented 1 year ago

Hi, Michael, Please try do not use hpc-stack build cmake/2.20.0. I just close it for you to test. You can directly use the system installed cmake/2.20.1

MichaelLueken commented 1 year ago

Hi, @Hang-Lei-NOAA, I was building the GSI using gnu/9.2.0 with the system installed cmake/3.20.1 and not hpc-stack build cmake/3.20.0:

cmake/3.20.1 (L,D)

The GSI still fails to compile because the GSI requires sigio (the following is from the GSI CMakeLists.txt file:

find_package(sigio REQUIRED)

and there is nothing present in the sigio/2.3.2 directory for the hpc/1.1.0 build with gnu/9.2.0:

[Michael.Lueken@hfe10 gsi]$ cd /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2
[Michael.Lueken@hfe10 2.3.2]$ ls
[Michael.Lueken@hfe10 2.3.2]$
Hang-Lei-NOAA commented 1 year ago

Please try it again. Thanks. I used to have sigio problem due to lmod and cmake.

-bash-4.2$ ls /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2/include sigio_module.mod sigio_r_module.mod -bash-4.2$ module load sigio -bash-4.2$ module show sigio

/scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/modulefiles/compiler/gnu/9.2.0/sigio/2.3.2.lua:

help([[]]) conflict("sigio") setenv("sigio_ROOT","/scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2") setenv("sigio_VERSION","2.3.2") setenv("SIGIO_INC","/scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2/include") setenv("SIGIO_LIB","/scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2/lib/libsigio.a") setenv("SIGIO_INC4","/scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2/include") setenv("SIGIO_LIB4","/scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2/lib/libsigio.a") whatis("Name: sigio") whatis("Version: 2.3.2") whatis("Category: library") whatis("Description: sigio library")

-bash-4.2$ ls -l /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2/lib/libsigio.a -rw-r--r-- 1 Hang.Lei nwprod 560054 Aug 22 17:20 /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2/lib/libsigio.a

On Mon, Aug 22, 2022 at 1:07 PM MichaelLueken-NOAA @.***> wrote:

Hi, @Hang-Lei-NOAA https://github.com/Hang-Lei-NOAA, I was building the GSI using gnu/9.2.0 with the system installed cmake/3.20.1 and not hpc-stack build cmake/3.20.0:

cmake/3.20.1 (L,D)

The GSI still fails to compile because the GSI requires sigio (the following is from the GSI CMakeLists.txt file:

find_package(sigio REQUIRED)

and there is nothing present in the sigio/2.3.2 directory for the hpc/1.1.0 build with gnu/9.2.0:

@. gsi]$ cd /scratch2/NCEPDEV/nwprod/hpc-stack/libs/hpc-stack/gnu-9.2.0/sigio/2.3.2 @. 2.3.2]$ ls @.*** 2.3.2]$

— Reply to this email directly, view it on GitHub https://github.com/NOAA-EMC/hpc-stack/issues/483#issuecomment-1222649782, or unsubscribe https://github.com/notifications/unsubscribe-auth/AKWSMFGHEHJDXK3YFOU5KCDV2OXTRANCNFSM57HSE35A . You are receiving this because you were mentioned.Message ID: @.***>

MichaelLueken commented 1 year ago

Hi, @Hang-Lei-NOAA. Thank you very much! I was successfully able to compile the GSI with the hpc/1.1.0 gnu/9.2.0 settings.