search

NOAA-GFDL / CEFI-regional-MOM6

A repository containing essential tools, XML files, and source codes for collaborators of the Climate, Ecosystems, and Fisheries Initiative (CEFI) to conduct simulations.
Other
19 stars 16 forks source link

loading NWA12.COBALT example on gaea #51

Closed eric-mortenson closed 5 months ago

eric-mortenson commented 5 months ago

I am now on the gaea system, and I tried to follow the wiki on how to setup the NWA12.COBALT example there (https://github.com/NOAA-GFDL/CEFI-regional-MOM6/tree/main/exps). I was able to build, but when I tried to run, I had a couple problems:

-1- when I try to run, the run.sub file crashes because it does not point to the right MOM6SIS2 directory: slurmstepd: error: execve(): /autofs/ncrc-svm1_home1/Eric.Mortenson/CEFI-regional-MOM6/exps/NWA12.COBALT/./builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2: No such file or directory

I fixed above by creating a virtual path in the exps/NWA12.COBALT directory:ln -s /na1_home1/Eric.Mortenson/CEFI-regional-MOM6/builds/build/gaea-ncrc5.intel23/ocean_ice/repro/MOM6SIS2 .

-2- after that, the read of input.nml causes a crash because it does not exist. I fixed this before by changing the name of input.nml_24hr to input.nml (and I had the same issue when trying to run the 1D experiment earlier).

I was able to submit it after those fixes, but I thought you'd like to know about those two issues.

yichengt900 commented 5 months ago

@eric-mortenson, glad to hear you are able to run the NWA12.COBALT case, and good catch. At the moment, instead of using run.sub, we are using driver.sh to run this test case as one of our regression tests. I will update run.sub accordingly to avoid any confusion in the future.