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Bump the python-dependencies group with 5 updates #381

Closed dependabot[bot] closed 3 months ago

dependabot[bot] commented 4 months ago

Bumps the python-dependencies group with 5 updates:

Package From To
xarray 2024.3.0 2024.5.0
cfgrib 0.9.11.0 0.9.12.0
pytest 8.2.0 8.2.1
ruff 0.4.3 0.4.7
coverage 7.5.1 7.5.3

Updates xarray from 2024.3.0 to 2024.5.0

Release notes

Sourced from xarray's releases.

v2024.05.0

This release brings support for pandas ExtensionArray objects, optimizations when reading Zarr, the ability to concatenate datasets without pandas indexes, more compatibility fixes for the upcoming numpy 2.0, and the migration of most of the xarray-datatree project code into xarray main!

Thanks to the 18 contributors to this release: Aimilios Tsouvelekakis, Andrey Akinshin, Deepak Cherian, Eni Awowale, Ilan Gold, Illviljan, Justus Magin, Mark Harfouche, Matt Savoie, Maximilian Roos, Noah C. Benson, Pascal Bourgault, Ray Bell, Spencer Clark, Tom Nicholas, ignamv, owenlittlejohns, and saschahofmann.

What's Changed

... (truncated)

Commits


Updates cfgrib from 0.9.11.0 to 0.9.12.0

Changelog

Sourced from cfgrib's changelog.

0.9.12.0 (2024-05-26)

  • fixed issue where GRIB messages with non-hourly steps could not be read See [#370](https://github.com/ecmwf/cfgrib/issues/370) <https://github.com/ecmwf/cfgrib/pull/370>_.
Commits
  • 3fa5db4 Fix syntax in CHANGELOG.rst
  • ef3c085 Prepare 0.9.12.0 release
  • eacde4c Update dependencies for security warnings from dependabot
  • 50bb9bf Merge pull request #371 from Metamess/issue-370-endstep-not-integer
  • cc5e3c4 mypy fix for #370
  • 10f348e Merge branch 'master' into issue-370-endstep-not-integer
  • 453d53f Updated changelog for #370
  • a7ccd26 Merge pull request #377 from maresb/fix-code-blocks
  • ca38aa6 Fix broken code-blocks in rst files
  • cce6b80 Merge branch 'master' into issue-370-endstep-not-integer
  • Additional commits viewable in compare view


Updates pytest from 8.2.0 to 8.2.1

Release notes

Sourced from pytest's releases.

8.2.1

pytest 8.2.1 (2024-05-19)

Improvements

  • #12334: Support for Python 3.13 (beta1 at the time of writing).

Bug Fixes

  • #12120: Fix [PermissionError]{.title-ref} crashes arising from directories which are not selected on the command-line.
  • #12191: Keyboard interrupts and system exits are now properly handled during the test collection.
  • #12300: Fixed handling of 'Function not implemented' error under squashfuse_ll, which is a different way to say that the mountpoint is read-only.
  • #12308: Fix a regression in pytest 8.2.0 where the permissions of automatically-created .pytest_cache directories became rwx------ instead of the expected rwxr-xr-x.

Trivial/Internal Changes

  • #12333: pytest releases are now attested using the recent Artifact Attestation support from GitHub, allowing users to verify the provenance of pytest's sdist and wheel artifacts.
Commits
  • 66ff8df Prepare release version 8.2.1
  • 3ffcfd1 Merge pull request #12340 from pytest-dev/backport-12334-to-8.2.x
  • 0b28313 [8.2.x] Add Python 3.13 (beta) support
  • f3dd93a [8.2.x] Attest package provenance (#12335)
  • bb5a125 [8.2.x] Spelling (#12331)
  • f179bf2 Merge pull request #12327 from pytest-dev/backport-12325-to-8.2.x
  • 2b671b5 [8.2.x] cacheprovider: fix .pytest_cache not being world-readable
  • 65ab7cb Merge pull request #12324 from pytest-dev/backport-12320-to-8.2.x
  • 4d5fb7d Merge pull request #12319 from pytest-dev/backport-12311-to-8.2.x
  • cbe5996 [8.2.x] changelog: document unittest 8.2 change as breaking
  • Additional commits viewable in compare view


Updates ruff from 0.4.3 to 0.4.7

Release notes

Sourced from ruff's releases.

v0.4.7

Changes

Preview features

  • [flake8-pyi] Implement PYI064 (#11325)
  • [flake8-pyi] Implement PYI066 (#11541)
  • [flake8-pyi] Implement PYI057 (#11486)
  • [pyflakes] Add option to enable F822 in __init__.py files (#11370)

Formatter

  • Fix incorrect placement of trailing stub function comments (#11632)

Server

  • Respect file exclusions in ruff server (#11590)
  • Add support for documents not exist on disk (#11588)
  • Add Vim and Kate setup guide for ruff server (#11615)

Bug fixes

  • Avoid removing newlines between docstring headers and rST blocks (#11609)
  • Infer indentation with imports when logical indent is absent (#11608)
  • Use char index rather than position for indent slice (#11645)
  • [flake8-comprehension] Strip parentheses around generators in C400 (#11607)
  • Mark repeated-isinstance-calls as unsafe on Python 3.10 and later (#11622)

Contributors

v0.4.6

Changes

Breaking changes

  • Use project-relative paths when calculating GitLab fingerprints (#11532)

... (truncated)

Changelog

Sourced from ruff's changelog.

0.4.7

Preview features

  • [flake8-pyi] Implement PYI064 (#11325)
  • [flake8-pyi] Implement PYI066 (#11541)
  • [flake8-pyi] Implement PYI057 (#11486)
  • [pyflakes] Add option to enable F822 in __init__.py files (#11370)

Formatter

  • Fix incorrect placement of trailing stub function comments (#11632)

Server

  • Respect file exclusions in ruff server (#11590)
  • Add support for documents not exist on disk (#11588)
  • Add Vim and Kate setup guide for ruff server (#11615)

Bug fixes

  • Avoid removing newlines between docstring headers and rST blocks (#11609)
  • Infer indentation with imports when logical indent is absent (#11608)
  • Use char index rather than position for indent slice (#11645)
  • [flake8-comprehension] Strip parentheses around generators in C400 (#11607)
  • Mark repeated-isinstance-calls as unsafe on Python 3.10 and later (#11622)

0.4.6

Breaking changes

  • Use project-relative paths when calculating GitLab fingerprints (#11532)
  • Bump minimum supported Windows version to Windows 10 (#11613)

Preview features

  • [flake8-async] Sleep with >24 hour interval should usually sleep forever (ASYNC116) (#11498)

Rule changes

  • [numpy] Add missing functions to NumPy 2.0 migration rule (#11528)
  • [mccabe] Consider irrefutable pattern similar to if .. else for C901 (#11565)
  • Consider match-case statements for C901, PLR0912, and PLR0915 (#11521)
  • Remove empty strings when converting to f-string (UP032) (#11524)
  • [flake8-bandit] request-without-timeout should warn for requests.request (#11548)
  • [flake8-self] Ignore sunder accesses in flake8-self rules (#11546)
  • [pyupgrade] Lint for TypeAliasType usages (UP040) (#11530)

Server

... (truncated)

Commits


Updates coverage from 7.5.1 to 7.5.3

Changelog

Sourced from coverage's changelog.

Version 7.5.3 — 2024-05-28

  • Performance improvements for combining data files, especially when measuring line coverage. A few different quadratic behaviors were eliminated. In one extreme case of combining 700+ data files, the time dropped from more than three hours to seven minutes. Thanks for Kraken Tech for funding the fix.

  • Performance improvements for generating HTML reports, with a side benefit of reducing memory use, closing issue 1791_. Thanks to Daniel Diniz for helping to diagnose the problem.

.. _issue 1791: nedbat/coveragepy#1791

.. _changes_7-5-2:

Version 7.5.2 — 2024-05-24

  • Fix: nested matches of exclude patterns could exclude too much code, as reported in issue 1779_. This is now fixed.

  • Changed: previously, coverage.py would consider a module docstring to be an executable statement if it appeared after line 1 in the file, but not executable if it was the first line. Now module docstrings are never counted as executable statements. This can change coverage.py's count of the number of statements in a file, which can slightly change the coverage percentage reported.

  • In the HTML report, the filter term and "hide covered" checkbox settings are remembered between viewings, thanks to Daniel Diniz <pull 1776_>_.

  • Python 3.13.0b1 is supported.

  • Fix: parsing error handling is improved to ensure bizarre source files are handled gracefully, and to unblock oss-fuzz fuzzing, thanks to Liam DeVoe <pull 1788_>. Closes issue 1787.

.. _pull 1776: nedbat/coveragepy#1776 .. _issue 1779: nedbat/coveragepy#1779 .. _issue 1787: nedbat/coveragepy#1787 .. _pull 1788: nedbat/coveragepy#1788

.. _changes_7-5-1:

Commits
  • f310d7e docs: sample HTML for 7.5.3
  • a51d52f docs: prep for 7.5.3
  • b666f3a perf: it's faster in all versions if we don't cache tokenize #1791
  • a2b4929 docs: changelog entry for combine performance improvements
  • b9aff50 perf: don't read full line_bits table each time
  • c45ebac perf: cache alias mapping
  • 390cb97 perf: avoid quadratic behavior when combining line coverage
  • d3caf53 docs(build): tweaks to howto
  • 909e887 build: bump version
  • 242adea build: don't claim pre-alpha-1 in classifiers
  • Additional commits viewable in compare view


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github-actions[bot] commented 4 months ago

Code Coverage

Package Line Rate Branch Rate Health
vxingest 33% 38% ❌
vxingest.builder_common 27% 15% ❌
vxingest.ctc_to_cb 12% 1% ❌
vxingest.grib2_to_cb 13% 1% ❌
vxingest.netcdf_to_cb 13% 1% ❌
vxingest.partial_sums_to_cb 12% 1% ❌
vxingest.utilities 30% 32% ❌
Summary 16% (490 / 3033) 6% (40 / 712) ❌
dependabot[bot] commented 3 months ago

Looks like these dependencies are updatable in another way, so this is no longer needed.