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Bump the python-dependencies group across 1 directory with 8 updates #388

Closed dependabot[bot] closed 2 weeks ago

dependabot[bot] commented 3 weeks ago

Bumps the python-dependencies group with 8 updates in the / directory:

Package From To
xarray 2024.3.0 2024.6.0
netcdf4 1.6.5 1.7.1.post1
cfgrib 0.9.11.0 0.9.13.0
couchbase 4.2.1 4.3.0
numpy 1.26.4 2.0.0
pytest 8.2.0 8.2.2
ruff 0.4.3 0.5.0
coverage 7.5.1 7.5.4

Updates xarray from 2024.3.0 to 2024.6.0

Release notes

Sourced from xarray's releases.

v2024.06.0

This release brings compatibility with numpy 2 and various performance optimizations.

Thanks to the 22 contributors to this release: Alfonso Ladino, David Hoese, Deepak Cherian, Eni Awowale, Ilan Gold, Jessica Scheick, Joe Hamman, Justus Magin, Kai Mühlbauer, Mark Harfouche, Mathias Hauser, Matt Savoie, Maximilian Roos, Mike Thramann, Nicolas Karasiak, Owen Littlejohns, Paul Ockenfuß, Philippe THOMY, Scott Henderson, Spencer Clark, Stephan Hoyer and Tom Nicholas

What's Changed

New Contributors

... (truncated)

Commits


Updates netcdf4 from 1.6.5 to 1.7.1.post1

Changelog

Sourced from netcdf4's changelog.

version 1.7.1 (tag v1.7.1rel)

  • include nc_complex source code from v0.2.0 tag (instead of using submodule).
  • add aarch64 wheels.

version 1.7.0 (tag v1.7.0rel)

  • add support for complex numbers via auto_complex keyword to Dataset (PR #1295)
  • fix for deprecated Cython DEF and IF statements using compatibility header with shims for unavailable functionality (PR #1277)
  • use szip as the library name on Windows (PR #1304)
  • add support for MS-MPI MPI_Message detection (PR #1305)
  • fix for issue #1306 - surprising result when indexing vlen str with non-contiguous indices.
  • Fix bug in set_collective introduced in PR #1277 (collective mode was always set).
Commits


Updates cfgrib from 0.9.11.0 to 0.9.13.0

Release notes

Sourced from cfgrib's releases.

0.9.13.0

Changelog

Sourced from cfgrib's changelog.

0.9.13.0 (2024-06-27)

  • Allow users to pass of list of values to filter a key by. See [#384](https://github.com/ecmwf/cfgrib/issues/384) <https://github.com/ecmwf/cfgrib/pull/384>_.

  • Functionality to ignore keys when reading a grib file See [#382](https://github.com/ecmwf/cfgrib/issues/382) <https://github.com/ecmwf/cfgrib/pull/382>_.

  • Preserve coordinate encoding in cfgrib.open_datasets See [#381](https://github.com/ecmwf/cfgrib/issues/381) <https://github.com/ecmwf/cfgrib/pull/381>_.

0.9.12.0 (2024-05-26)

  • fixed issue where GRIB messages with non-hourly steps could not be read See [#370](https://github.com/ecmwf/cfgrib/issues/370) <https://github.com/ecmwf/cfgrib/pull/370>_.
Commits


Updates couchbase from 4.2.1 to 4.3.0

Commits
  • b92c82d Update C++ core to 1.0.0
  • 1207880 PYCBC-1588: Add support for importing FTS index from JSON
  • 11a2040 Bump Vector Search to committed stability level.
  • 388682b Update pre-commit hooks and clang-format
  • c3e29d6 Update C++ core
  • 4e0beea PYCBC-1603: Handle empty VectorQuery field name
  • f630b04 PYCBC-1597: Support for base64 encoded vector types
  • d7391bc Update C++ core
  • 539679d PYCBC-1583: Fix BucketType.COUCHBASE being ignored from bucket settings
  • e86af1c PYCBC-1596: Fix AnalyticsStatus Enum values
  • Additional commits viewable in compare view


Updates numpy from 1.26.4 to 2.0.0

Release notes

Sourced from numpy's releases.

v2.0.0

NumPy 2.0.0 Release Notes

NumPy 2.0.0 is the first major release since 2006. It is the result of 11 months of development since the last feature release and is the work of 212 contributors spread over 1078 pull requests. It contains a large number of exciting new features as well as changes to both the Python and C APIs.

This major release includes breaking changes that could not happen in a regular minor (feature) release - including an ABI break, changes to type promotion rules, and API changes which may not have been emitting deprecation warnings in 1.26.x. Key documents related to how to adapt to changes in NumPy 2.0, in addition to these release notes, include:

Highlights

Highlights of this release include:

  • New features:
    • A new variable-length string dtype, numpy.dtypes.StringDType and a new numpy.strings namespace with performant ufuncs for string operations,
    • Support for float32 and longdouble in all numpy.fft functions,
    • Support for the array API standard in the main numpy namespace.
  • Performance improvements:
    • Sorting functions sort, argsort, partition, argpartition have been accelerated through the use of the Intel x86-simd-sort and Google Highway libraries, and may see large (hardware-specific) speedups,
    • macOS Accelerate support and binary wheels for macOS >=14, with significant performance improvements for linear algebra operations on macOS, and wheels that are about 3 times smaller,
    • numpy.char fixed-length string operations have been accelerated by implementing ufuncs that also support numpy.dtypes.StringDType in addition to the fixed-length string dtypes,
    • A new tracing and introspection API, numpy.lib.introspect.opt_func_info, to determine which hardware-specific kernels are available and will be dispatched to.
    • numpy.save now uses pickle protocol version 4 for saving arrays with object dtype, which allows for pickle objects larger than 4GB and improves saving speed by about 5% for large arrays.
  • Python API improvements:

... (truncated)

Commits
  • 1d49c7f Merge pull request #26698 from charris/prepare-2.0.0
  • 2103511 DOC: Remove duplicate in author list.
  • db8030e BUG: Change cibuildwheel version [wheel build]
  • 1a68264 REL: Prepare for the NumPy 2.0.0 release [wheel build]
  • c8665ba Merge pull request #26696 from charris/backport-26582
  • 103f4dd Merge pull request #26697 from charris/backport-25963
  • c193dcd Merge pull request #26695 from charris/backport-26667
  • 8fa8191 BUG: Fix bug in numpy.pad() (#25963)
  • ece3559 BUG: weighted nanpercentile, nanquantile and multi-dim q (#26582)
  • b31e195 BUG: Adds asanyarray to start of linalg.cross (#26667)
  • Additional commits viewable in compare view


Updates pytest from 8.2.0 to 8.2.2

Release notes

Sourced from pytest's releases.

8.2.2

pytest 8.2.2 (2024-06-04)

Bug Fixes

  • #12355: Fix possible catastrophic performance slowdown on a certain parametrization pattern involving many higher-scoped parameters.
  • #12367: Fix a regression in pytest 8.2.0 where unittest class instances (a fresh one is created for each test) were not released promptly on test teardown but only on session teardown.
  • #12381: Fix possible "Directory not empty" crashes arising from concurent cache dir (.pytest_cache) creation. Regressed in pytest 8.2.0.

Improved Documentation

  • #12290: Updated Sphinx theme to use Furo instead of Flask, enabling Dark mode theme.
  • #12356: Added a subsection to the documentation for debugging flaky tests to mention lack of thread safety in pytest as a possible source of flakyness.
  • #12363: The documentation webpages now links to a canonical version to reduce outdated documentation in search engine results.

8.2.1

pytest 8.2.1 (2024-05-19)

Improvements

  • #12334: Support for Python 3.13 (beta1 at the time of writing).

Bug Fixes

  • #12120: Fix [PermissionError]{.title-ref} crashes arising from directories which are not selected on the command-line.
  • #12191: Keyboard interrupts and system exits are now properly handled during the test collection.
  • #12300: Fixed handling of 'Function not implemented' error under squashfuse_ll, which is a different way to say that the mountpoint is read-only.
  • #12308: Fix a regression in pytest 8.2.0 where the permissions of automatically-created .pytest_cache directories became rwx------ instead of the expected rwxr-xr-x.

Trivial/Internal Changes

  • #12333: pytest releases are now attested using the recent Artifact Attestation support from GitHub, allowing users to verify the provenance of pytest's sdist and wheel artifacts.
Commits
  • 329d371 Prepare release version 8.2.2
  • 214d098 Merge pull request #12414 from bluetech/backport-12409
  • 153a436 [8.2.x] fixtures: fix catastrophic performance problem in reorder_items
  • b41d5a5 Merge pull request #12412 from pytest-dev/backport-12408-to-8.2.x
  • 9bb73d7 [8.2.x] cacheprovider: fix "Directory not empty" crash from cache directory c...
  • 4569a01 [8.2.x] doc: Update trainings/events (#12402)
  • 1d103e5 [8.2.x] Clarify pytest_ignore_collect docs (#12386)
  • 240a252 [8.2.x] Add html_baseurl to sphinx conf.py (#12372)
  • a5ee3c4 Merge pull request #12370 from pytest-dev/backport-12368-to-8.2.x
  • f7358ae [8.2.x] unittest: fix class instances no longer released on test teardown sin...
  • Additional commits viewable in compare view


Updates ruff from 0.4.3 to 0.5.0

Release notes

Sourced from ruff's releases.

0.5.0

Release Notes

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

See also, the "Remapped rules" section which may result in disabled rules.

  • Follow the XDG specification to discover user-level configurations on macOS (same as on other Unix platforms)
  • Selecting ALL now excludes deprecated rules
  • The released archives now include an extra level of nesting, which can be removed with --strip-components=1 when untarring.
  • The release artifact's file name no longer includes the version tag. This enables users to install via /latest URLs on GitHub.
  • The diagnostic ranges for some flake8-bandit rules were modified (#10667).

Deprecations

The following rules are now deprecated:

Remapped rules

The following rules have been remapped to new rule codes:

Stabilization

The following rules have been stabilized and are no longer in preview:

... (truncated)

Changelog

Sourced from ruff's changelog.

0.5.0

Check out the blog post for a migration guide and overview of the changes!

Breaking changes

See also, the "Remapped rules" section which may result in disabled rules.

  • Follow the XDG specification to discover user-level configurations on macOS (same as on other Unix platforms)
  • Selecting ALL now excludes deprecated rules
  • The released archives now include an extra level of nesting, which can be removed with --strip-components=1 when untarring.
  • The release artifact's file name no longer includes the version tag. This enables users to install via /latest URLs on GitHub.
  • The diagnostic ranges for some flake8-bandit rules were modified (#10667).

Deprecations

The following rules are now deprecated:

Remapped rules

The following rules have been remapped to new rule codes:

Stabilization

The following rules have been stabilized and are no longer in preview:

... (truncated)

Commits
  • 244b923 Add necessary permissions for cargo-dist Docker build (#12072)
  • a8b48fc Release v0.5.0 (#12068)
  • 04c8597 [flake8-simplify] Stabilize detection of Yoda conditions for "constant" col...
  • 4029a25 [Ruff v0.5] Stabilise 15 pylint rules (#12051)
  • 0917ce1 Update documentation to mention etcetera crate instead of dirs for user c...
  • 22cebdf Add server config to filter out syntax error diagnostics (#12059)
  • 72b6c26 Simplify LinterResult, avoid cloning ParseError (#11903)
  • 73851e7 Avoid displaying syntax error as log message (#11902)
  • e7b4969 Remove E999 as a rule, disallow any disablement methods for syntax error (#...
  • c98d8a0 [pyflakes] Stabilize detection of is comparisons to lists, etc. (F632) (#...
  • Additional commits viewable in compare view


Updates coverage from 7.5.1 to 7.5.4

Changelog

Sourced from coverage's changelog.

Version 7.5.4 — 2024-06-22

  • If you attempt to combine statement coverage data with branch coverage data, coverage.py used to fail with the message "Can't combine arc data with line data" or its reverse, "Can't combine line data with arc data." These messages used internal terminology, making it hard for people to understand the problem. They are now changed to mention "branch coverage data" and "statement coverage data."

  • Fixed a minor branch coverage problem with wildcard match/case cases using names or guard clauses.

  • Started testing on 3.13 free-threading (nogil) builds of Python. I'm not claiming full support yet. Closes issue 1799_.

.. _issue 1799: nedbat/coveragepy#1799

.. _changes_7-5-3:

Version 7.5.3 — 2024-05-28

  • Performance improvements for combining data files, especially when measuring line coverage. A few different quadratic behaviors were eliminated. In one extreme case of combining 700+ data files, the time dropped from more than three hours to seven minutes. Thanks for Kraken Tech for funding the fix.

  • Performance improvements for generating HTML reports, with a side benefit of reducing memory use, closing issue 1791_. Thanks to Daniel Diniz for helping to diagnose the problem.

.. _issue 1791: nedbat/coveragepy#1791

.. _changes_7-5-2:

Version 7.5.2 — 2024-05-24

  • Fix: nested matches of exclude patterns could exclude too much code, as reported in issue 1779_. This is now fixed.

  • Changed: previously, coverage.py would consider a module docstring to be an executable statement if it appeared after line 1 in the file, but not executable if it was the first line. Now module docstrings are never counted as executable statements. This can change coverage.py's count of the number of statements in a file, which can slightly change the coverage percentage reported.

... (truncated)

Commits
  • 22c09c6 docs: sample HTML for 7.5.4
  • 9e16381 docs: prep for 7.5.4
  • fba9b9e docs: link issue 1799 from the changelog
  • f124de8 build: no longer download kits to upload them
  • 9516cf6 build: hash-pin all actions
  • c6e0985 build: finish up the publish action
  • 4a49458 build: get the latest dist run id for publishing
  • fb15efa build: pin hashes for publishing actions
  • c20af95 build: use the correct item: github.event.action
  • ccbab15 build: dump all the github actions data
  • Additional commits viewable in compare view


Dependabot will resolve any conflicts with this PR as long as you don't alter it yourself. You can also trigger a rebase manually by commenting @dependabot rebase.

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ian-noaa commented 2 weeks ago

@dependabot rebase

dependabot[bot] commented 2 weeks ago

Superseded by #390.