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Bump the python-dependencies group across 1 directory with 7 updates #408

Closed dependabot[bot] closed 1 month ago

dependabot[bot] commented 1 month ago

Bumps the python-dependencies group with 7 updates in the / directory:

Package From To
xarray 2024.6.0 2024.7.0
cfgrib 0.9.13.0 0.9.14.0
numpy 2.0.0 2.0.1
pytest 8.2.2 8.3.2
types-pyyaml 6.0.12.20240311 6.0.12.20240724
ruff 0.5.1 0.5.6
coverage 7.6.0 7.6.1

Updates xarray from 2024.6.0 to 2024.7.0

Release notes

Sourced from xarray's releases.

v2024.07.0

This release extends the API for groupby operations with various grouper objects, and includes improvements to the documentation and numerous bugfixes.

Thanks to the 22 contributors to this release: Alfonso Ladino, ChrisCleaner, David Hoese, Deepak Cherian, Dieter Werthmüller, Illviljan, Jessica Scheick, Joel Jaeschke, Justus Magin, K. Arthur Endsley, Kai Mühlbauer, Mark Harfouche, Martin Raspaud, Mathijs Verhaegh, Maximilian Roos, Michael Niklas, Michał Górny, Moritz Schreiber, Pontus Lurcock, Spencer Clark, Stephan Hoyer and Tom Nicholas

What's Changed

... (truncated)

Commits


Updates cfgrib from 0.9.13.0 to 0.9.14.0

Release notes

Sourced from cfgrib's releases.

0.9.14.0

What's Changed

New Contributors

Full Changelog: https://github.com/ecmwf/cfgrib/compare/0.9.13.0...0.9.14.0

Changelog

Sourced from cfgrib's changelog.

0.9.14.0 (2024-07-19)

  • Added coords_as_attributes argument to open_dataset() to allow selected dimensions to be stored as attributes rather than dimensions, allowing more heterogeneous data to be encoded as an xarray dataset. See [#394](https://github.com/ecmwf/cfgrib/issues/394) <https://github.com/ecmwf/cfgrib/pull/394>_.

  • Added valid_month dimension if monthlyVerificationDate and validityTime are available. See [#393](https://github.com/ecmwf/cfgrib/issues/393) <https://github.com/ecmwf/cfgrib/pull/393>_.

  • Added uvRelativeToGrid to list of GRIB keys read by default. See [#379](https://github.com/ecmwf/cfgrib/issues/379) <https://github.com/ecmwf/cfgrib/pull/379>_.

Commits
  • bfb5e51 Prepare 0.9.14.0 release
  • 59e5b3a Merge pull request #379 from blaylockbk/master
  • 2d06f22 Merge branch 'master' into master
  • c9d7ef9 Merge pull request #394 from ecmwf/feature/coords_as_attributes
  • 5a9044c coords_as_attributes functionality
  • 8b8e896 Merge pull request #393 from ecmwf/feature/robust_valid_time
  • ba56258 valid_month, and tests
  • fb5eb09 warn don't raise when time_dims not recognised
  • 32624c5 Merge pull request #392 from ecmwf/feature/DependabotAlerts
  • 5d45e28 Dependabot alerts: zipp
  • Additional commits viewable in compare view


Updates numpy from 2.0.0 to 2.0.1

Release notes

Sourced from numpy's releases.

v2.0.1

NumPy 2.0.1 Release Notes

NumPy 2.0.1 is a maintenance release that fixes bugs and regressions discovered after the 2.0.0 release. NumPy 2.0.1 is the last planned release in the 2.0.x series, 2.1.0rc1 should be out shortly.

The Python versions supported by this release are 3.9-3.12.

NOTE: Do not use the GitHub generated "Source code" files listed in the "Assets", they are garbage.

Improvements

np.quantile with method closest_observation chooses nearest even order statistic

This changes the definition of nearest for border cases from the nearest odd order statistic to nearest even order statistic. The numpy implementation now matches other reference implementations.

(gh-26656)

Contributors

A total of 15 people contributed to this release. People with a "+" by their names contributed a patch for the first time.

  • @​vahidmech +
  • Alex Herbert +
  • Charles Harris
  • Giovanni Del Monte +
  • Leo Singer
  • Lysandros Nikolaou
  • Matti Picus
  • Nathan Goldbaum
  • Patrick J. Roddy +
  • Raghuveer Devulapalli
  • Ralf Gommers
  • Rostan Tabet +
  • Sebastian Berg
  • Tyler Reddy
  • Yannik Wicke +

Pull requests merged

A total of 24 pull requests were merged for this release.

  • #26711: MAINT: prepare 2.0.x for further development
  • #26792: TYP: fix incorrect import in ma/extras.pyi stub
  • #26793: DOC: Mention '1.25' legacy printing mode in set_printoptions
  • #26794: DOC: Remove mention of NaN and NAN aliases from constants

... (truncated)

Commits
  • 4c9f431 Merge pull request #27000 from charris/prepare-2.0.1
  • 0e70e00 REL: Prepare for the NumPy 2.0.1 release [wheel build]
  • 4d10ffc Merge pull request #26995 from charris/backport-26985
  • 764b667 BUG: Add object cast to avoid warning with limited API
  • 9be6ad6 Merge pull request #26971 from charris/backport-26935
  • 6d950e9 BUG: fix f2py tests to work with v2 API
  • 89630c0 Merge pull request #26962 from charris/backport-26919
  • 88fa840 TST: Apply test suggestion by Nathan for rlstrip fixes
  • a9da01e BUG,MAINT: Fix utf-8 character stripping memory access
  • 6afbbf8 Merge pull request #26963 from charris/backport-26930
  • Additional commits viewable in compare view


Updates pytest from 8.2.2 to 8.3.2

Release notes

Sourced from pytest's releases.

8.3.2

pytest 8.3.2 (2024-07-24)

Bug fixes

  • #12652: Resolve regression [conda]{.title-ref} environments where no longer being automatically detected.

    -- by RonnyPfannschmidt{.interpreted-text role="user"}

8.3.1

pytest 8.3.1 (2024-07-20)

The 8.3.0 release failed to include the change notes and docs for the release. This patch release remedies this. There are no other changes.

8.3.0

pytest 8.3.0 (2024-07-20)

New features

  • #12231: Added [--xfail-tb]{.title-ref} flag, which turns on traceback output for XFAIL results.

    • If the [--xfail-tb]{.title-ref} flag is not given, tracebacks for XFAIL results are NOT shown.
    • The style of traceback for XFAIL is set with [--tb]{.title-ref}, and can be [auto|long|short|line|native|no]{.title-ref}.
    • Note: Even if you have [--xfail-tb]{.title-ref} set, you won't see them if [--tb=no]{.title-ref}.

    Some history:

    With pytest 8.0, [-rx]{.title-ref} or [-ra]{.title-ref} would not only turn on summary reports for xfail, but also report the tracebacks for xfail results. This caused issues with some projects that utilize xfail, but don't want to see all of the xfail tracebacks.

    This change detaches xfail tracebacks from [-rx]{.title-ref}, and now we turn on xfail tracebacks with [--xfail-tb]{.title-ref}. With this, the default [-rx]{.title-ref}/ [-ra]{.title-ref} behavior is identical to pre-8.0 with respect to xfail tracebacks. While this is a behavior change, it brings default behavior back to pre-8.0.0 behavior, which ultimately was considered the better course of action.

  • #12281: Added support for keyword matching in marker expressions.

    Now tests can be selected by marker keyword arguments. Supported values are int{.interpreted-text role="class"}, (unescaped) str{.interpreted-text role="class"}, bool{.interpreted-text role="class"} & None{.interpreted-text role="data"}.

    See marker examples <marker_keyword_expression_example>{.interpreted-text role="ref"} for more information.

    -- by lovetheguitar{.interpreted-text role="user"}

  • #12567: Added --no-fold-skipped command line option.

    If this option is set, then skipped tests in short summary are no longer grouped by reason but all tests are printed individually with their nodeid in the same way as other statuses.

    -- by pbrezina{.interpreted-text role="user"}

... (truncated)

Commits
  • bbcec9c Prepare release version 8.3.2
  • 78fe8b6 Merge pull request #12657 from pytest-dev/patchback/backports/8.3.x/6c806b499...
  • 238bad2 Merge pull request #12656 from RonnyPfannschmidt/fix-12652-detect-conda-env
  • ae6034a Merge pull request #12641 from pytest-dev/patchback/backports/8.3.x/c03989cee...
  • 31337ab Merge pull request #12640 from pytest-dev/update-user
  • ca3070b Merge pull request #12637 from pytest-dev/release-8.3.1
  • de98446 Prepare release version 8.3.1
  • bd0a042 Merge pull request #12636 from pytest-dev/update-release-notes
  • 664325b doc/changelog: update 8.3.0 notes
  • 19d225d Merge pull request #12635 from pytest-dev/release-8.3.0
  • Additional commits viewable in compare view


Updates types-pyyaml from 6.0.12.20240311 to 6.0.12.20240724

Commits


Updates ruff from 0.5.1 to 0.5.6

Release notes

Sourced from ruff's releases.

0.5.6

Release Notes

Ruff 0.5.6 automatically enables linting and formatting of notebooks in preview mode. You can opt-out of this behavior by adding *.ipynb to the extend-exclude setting.

[tool.ruff]
extend-exclude = ["*.ipynb"]

Preview features

  • Enable notebooks by default in preview mode (#12621)
  • [flake8-builtins] Implement import, lambda, and module shadowing (#12546)
  • [pydoclint] Add docstring-missing-returns (DOC201) and docstring-extraneous-returns (DOC202) (#12485)

Rule changes

  • [flake8-return] Exempt cached properties and other property-like decorators from explicit return rule (RET501) (#12563)

Server

  • Make server panic hook more error resilient (#12610)
  • Use $/logTrace for server trace logs in Zed and VS Code (#12564)
  • Keep track of deleted cells for reorder change request (#12575)

Configuration

  • [flake8-implicit-str-concat] Always allow explicit multi-line concatenations when implicit concatenations are banned (#12532)

Bug fixes

  • [flake8-async] Avoid flagging asyncio.timeouts as unused when the context manager includes asyncio.TaskGroup (#12605)
  • [flake8-slots] Avoid recommending __slots__ for classes that inherit from more than namedtuple (#12531)
  • [isort] Avoid marking required imports as unused (#12537)
  • [isort] Preserve trailing inline comments on import-from statements (#12498)
  • [pycodestyle] Add newlines before comments (E305) (#12606)
  • [pycodestyle] Don't attach comments with mismatched indents (#12604)
  • [pyflakes] Fix preview-mode bugs in F401 when attempting to autofix unused first-party submodule imports in an __init__.py file (#12569)
  • [pylint] Respect start index in unnecessary-list-index-lookup (#12603)
  • [pyupgrade] Avoid recommending no-argument super in slots=True dataclasses (#12530)
  • [pyupgrade] Use colon rather than dot formatting for integer-only types (#12534)
  • Fix NFKC normalization bug when removing unused imports (#12571)

Other changes

  • Consider more stdlib decorators to be property-like (#12583)
  • Improve handling of metaclasses in various linter rules (#12579)
  • Improve consistency between linter rules in determining whether a function is property (#12581)

... (truncated)

Changelog

Sourced from ruff's changelog.

0.5.6

Ruff 0.5.6 automatically enables linting and formatting of notebooks in preview mode. You can opt-out of this behavior by adding *.ipynb to the extend-exclude setting.

[tool.ruff]
extend-exclude = ["*.ipynb"]

Preview features

  • Enable notebooks by default in preview mode (#12621)
  • [flake8-builtins] Implement import, lambda, and module shadowing (#12546)
  • [pydoclint] Add docstring-missing-returns (DOC201) and docstring-extraneous-returns (DOC202) (#12485)

Rule changes

  • [flake8-return] Exempt cached properties and other property-like decorators from explicit return rule (RET501) (#12563)

Server

  • Make server panic hook more error resilient (#12610)
  • Use $/logTrace for server trace logs in Zed and VS Code (#12564)
  • Keep track of deleted cells for reorder change request (#12575)

Configuration

  • [flake8-implicit-str-concat] Always allow explicit multi-line concatenations when implicit concatenations are banned (#12532)

Bug fixes

  • [flake8-async] Avoid flagging asyncio.timeouts as unused when the context manager includes asyncio.TaskGroup (#12605)
  • [flake8-slots] Avoid recommending __slots__ for classes that inherit from more than namedtuple (#12531)
  • [isort] Avoid marking required imports as unused (#12537)
  • [isort] Preserve trailing inline comments on import-from statements (#12498)
  • [pycodestyle] Add newlines before comments (E305) (#12606)
  • [pycodestyle] Don't attach comments with mismatched indents (#12604)
  • [pyflakes] Fix preview-mode bugs in F401 when attempting to autofix unused first-party submodule imports in an __init__.py file (#12569)
  • [pylint] Respect start index in unnecessary-list-index-lookup (#12603)
  • [pyupgrade] Avoid recommending no-argument super in slots=True dataclasses (#12530)
  • [pyupgrade] Use colon rather than dot formatting for integer-only types (#12534)
  • Fix NFKC normalization bug when removing unused imports (#12571)

Other changes

  • Consider more stdlib decorators to be property-like (#12583)
  • Improve handling of metaclasses in various linter rules (#12579)
  • Improve consistency between linter rules in determining whether a function is property (#12581)

... (truncated)

Commits


Updates coverage from 7.6.0 to 7.6.1

Changelog

Sourced from coverage's changelog.

Version 7.6.1 — 2024-08-04

  • Fix: coverage used to fail when measuring code using :func:runpy.run_path <python:runpy.run_path> with a :class:Path <python:pathlib.Path> argument. This is now fixed, thanks to Ask Hjorth Larsen <pull 1819_>_.

  • Fix: backslashes preceding a multi-line backslashed string could confuse the HTML report. This is now fixed, thanks to LiuYinCarl <pull 1828_>_.

  • Now we publish wheels for Python 3.13, both regular and free-threaded.

.. _pull 1819: nedbat/coveragepy#1819 .. _pull 1828: nedbat/coveragepy#1828

.. _changes_7-6-0:

Commits
  • 29f5898 docs: sample HTML for 7.6.1
  • 9b829f1 docs: prep for 7.6.1
  • ebbb6a2 build: wheels for 3.13rc1
  • 3872525 chore: make upgrade
  • 7a27f40 test: fix a test on free-threading, use abiflags to get site-packages path co...
  • 2b53664 build: include gil/nogil in the version banner
  • da1682f docs: changelog and contributor for #1828
  • dc819ff test: two tests for #1828
  • 9aaa404 fix: properly handle backslash before multi-line string (#1828)
  • 9c50270 chore: make upgrade
  • Additional commits viewable in compare view


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github-actions[bot] commented 1 month ago

Code Coverage

Package Line Rate Branch Rate Health
vxingest 33% 38% ❌
vxingest.builder_common 27% 15% ❌
vxingest.ctc_to_cb 12% 1% ❌
vxingest.grib2_to_cb 13% 1% ❌
vxingest.netcdf_to_cb 13% 1% ❌
vxingest.partial_sums_to_cb 12% 1% ❌
vxingest.utilities 30% 32% ❌
Summary 16% (490 / 3033) 6% (40 / 712) ❌